- Probe CUST_38787_PI390587928
- Source Contig U35_13415
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38787_PI390587928 | Hv_44K_v2 | AATATGTTTCCATGTCCCCCAGTACTGATAATGAGATCAAATGGAAAGTAATCAGCTAAA | 453 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.471 | 1.597 | 1.126 | 0.787 | 0.350 | 0.467 |
| Raw | 408.870 | 650.600 | 423.317 | 477.908 | 71.634 | 107.025 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_47450.1 | 1246 | 1e-22 | 1181 - 1239 | 98 | 58 / 59 | plus | |
| Harvest21 | ABC26531 | 527 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus | ABC26531 |
| Harvest35 | U35_13415 | 527 | 3e-25 | 454 - 513 | 100 | 60 / 60 | plus |
Contig Sequence (527 bp)
>U35_13415 527 Hv_44K_v2 GGGCTGGTTTTGCTCTGGATCATGTGATTCGGGATGGAGACTCGACAGTTTTTCAGTTGA TCAAGCCTACAACCTTCAAGGTGCATATCATCCAAGCTACTGTTGGTGATGATGATGATG AGGAGGAGGAACCGGAGTGAGCGCCCCATGCAGCATCACTGCTTAAGAACTAACCTATCA GTAGATTAGATGGTATGTAGGAGTTGGGTATGGCTTAAGCTTTATCTATCTGGAGATTAG ATGGTACGTAGGAGTTGGGTATGGCTTAAGCTTTATCTATCTGGAGATTAGATGGTATGT AGGACTTGGGCATGGCTTAAGCTTTATCTATCTGGATCGCCTGTGCGGTTATGCATTTTG ATGGAATGTCCACCAGTGGCTTACAAGATGGCAAGTAGGATTTGGGGGCGTGGTGTAGGC TTTTGTGTATCAGGATTACCCGCGCAGCTATGTAATATGTTTCCATGTCCCCCAGTACTG ATAATGAGATCAAATGGAAAGTAATCAGCTAAAAAAAAAAAAAAAAA
Homology of Contig U35_13415 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |