barSeed - Barley Seed Development Database

Probe CUST_38786_PI390587928

Source Contig U35_13416

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38786_PI390587928	Hv_44K_v2	AGATTGATAGAATGGAGCCATCAGATCTTAACATAGATGAGGATTGTACCATGTACTCAC	461	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362444	3237	2e-24	538 - 597	100	60 / 60	plus	ABC16492
MLOC	MLOC_44139.2	2827	2e-24	348 - 407	100	60 / 60	plus	ABC16492
MLOC	MLOC_44139.1	3095	2e-24	348 - 407	100	60 / 60	plus	ABC16492
JLOC1	JLOC1_28576.2	2869	8e-25	167 - 226	100	60 / 60	plus
JLOC1	JLOC1_28576.1	3108	8e-25	356 - 415	100	60 / 60	plus
Harvest21	ABC24766	520	1e-24	462 - 520	100	59 / 59	plus
Harvest35	U35_13416	521	3e-25	462 - 521	100	60 / 60	plus

Contig Sequence (521 bp)

>U35_13416 521 Hv_44K_v2
ACCACCACCTCCCTCCCCTCCTCCTCCTCCTCCTCCTTCCCAACAGATTTCCCCAATCCC
GCCACCGAGCCGCGCCCGTGATCGCCCCCGAGCTCCCCGGATCCCGACGCCGGGGCGCGG
CCATTCGCCGCGGGAAGGGAAGCCTCTCTTGCTGAATCCTGCCACGCGGGGCGCTGCTGA
CGCCGTGATCCGCGCGGGCTCCCCGGGGGAATGTTCTACCTCAAGCTGCCGGGCGGCGCG
GATTTAGGGTCCCTGCGTGGGGCGGCGGGGCTGTGATCCGCCTCGCGGCGGCGGTTGAGG
CTCAGCCGGCCAGCGTCGGGGGTGGATTCCGGTCGTTCGGCCGGCCATGGCGCGCGCCGA
GGCGGACGCGAGCTGCCTCGAGAGCTTCGAGCTGTACGAGACCGACTCGAAATTTTATAT
TCTCGGAACTAACACTGACAAAACATTATGGAGATTACTCAAGATTGATAGAATGGAGCC
ATCAGATCTTAACATAGATGAGGATTGTACCATGTACTCAC

Homology of Contig U35_13416 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None