- Probe CUST_38777_PI390587928
- Source Contig U35_13426
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38777_PI390587928 | Hv_44K_v2 | CTTATAGATCATCCTAAAATTCGTGGGATGATGAACGGAGAAGTATGCCATGAGCTCCTA | 398 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.210 | 1.239 | 1.117 | 1.074 | 0.539 | 0.418 |
| Raw | 62.367 | 102.343 | 79.010 | 118.373 | 21.297 | 17.712 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_13316.1 | 2234 | 2e-24 | 451 - 510 | 100 | 60 / 60 | minus | ABC25491 |
| MLOC | MLOC_13316.2 | 1802 | 2e-24 | 62 - 121 | 100 | 60 / 60 | minus | ABC25491 |
| JLOC1 | JLOC1_9002.1 | 1802 | 8e-25 | 1682 - 1741 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC25491 | 536 | 3e-25 | 79 - 138 | 100 | 60 / 60 | minus | ABC25491 |
| Harvest35 | U35_13426 | 536 | 3e-25 | 399 - 458 | 100 | 60 / 60 | plus |
Contig Sequence (536 bp)
>U35_13426 536 Hv_44K_v2 AAAGCTCAGATGACAGTAGCTTGATGGTTACAAAGACACAACAATGATCCCAGTGCCACA GTCCTGAATGAAATACCATGACCGCAGGCCATTGCAGATTTGCGTTTCAAGAGGTGCAGC CAGCCACCCGAGTCAGCAGCAACTCTGTAGTTCCCGATTGAAAGGAAATATACGTGATGC AGTGCTGGATTATCATGTGGATAATGCCCGTTATTAGAAAGAGCGCTGTTATGCTCTGAA CTTCCAGGGGTAAGAAATTTCGGCATTTTCTTCAGTGCACTGAAGAATGGTGAAATCTTG GCATATGCTTCCTTTTTGTAGGCGATGCTTGTAAATCATTAGGCATAATAGCGAACAGAC TGTAGTTGTTCAAGTTGATCCTGTCCAAATTTTCTGGGCTTATAGATCATCCTAAAATTC GTGGGATGATGAACGGAGAAGTATGCCATGAGCTCCTAGCCCCTAGATGAAGGTGTGATG CCATGCCATGCGATGTAATGGATACTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_13426 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |