barSeed - Barley Seed Development Database

Probe CUST_38775_PI390587928

Source Contig U35_13428

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38775_PI390587928	Hv_44K_v2	GAAATCTGTTGCTGAGGAAGGAAAGCCTACCAGTGGATCTTTGGACTTCGATACTATGTA	430	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20424.1	1292	6e-24	794 - 852	100	59 / 59	minus	ABC25549
MLOC	MLOC_20424.2	1202	6e-24	704 - 762	100	59 / 59	minus	ABC25549
JLOC1	JLOC1_14147.2	1194	3e-24	432 - 490	100	59 / 59	plus
JLOC1	JLOC1_14147.1	1284	3e-24	432 - 490	100	59 / 59	plus
Harvest21	ABC25225	520	3e-25	431 - 490	100	60 / 60	plus
Harvest35	U35_13428	520	3e-25	431 - 490	100	60 / 60	plus

Contig Sequence (520 bp)

>U35_13428 520 Hv_44K_v2
GTGACTGTCCATCCTCAAGCAATCACGATGATCTTCCTTGCCCGTCAAGCAATGAGAATG
GCCCTCACTTGCCATTTTCAAGACATGAAGCAGAGGAGGAAGAATCTGATACATCAGAAG
ATATTGTTCCAGTTGTGGTTCGTCCTGGTCACATTCGCTTTGAGCCAGCAGGTGAACCAA
ATACGTCATCAGCGAAGGAAACACAGGCAAATGTCACGTGGGGTGGAACCATGAGCAAGA
AGAAGGGACAGAAGTGGGGAATGAACAACTCAAACAAGAAAAGTGCTAATGTCGAGAATC
TTGGGAAAATAGTTGGAAGTAATACTGAAGTTAACCACCTTATGGTAGATAGGAGGGATG
AGGAAAATGTTTTTTCTGGGGTCACTAATCAAAAGGTCAATGAGATCAATCATGATCTGT
TAGCAATGGAGAAATCTGTTGCTGAGGAAGGAAAGCCTACCAGTGGATCTTTGGACTTCG
ATACTATGTACCCCCTAACACGACTTCCAATGGAGGGAGA

Homology of Contig U35_13428 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g19040.1	562	1e-54	protein\|expressed protein
Brachypodium v1_2	Bradi4g39027.1	496	9e-71
Arabidopsis v10	None