barSeed - Barley Seed Development Database

Probe CUST_38764_PI390587928

Source Contig U35_13432

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38764_PI390587928	Hv_44K_v2	CTTGCTCGTATGTTCGGTGTCTAGTAGTGTAGGATGGTGTGTTTTGTTAGGCAGTGAAGA	694	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.622	1.541	1.108	0.723	0.239	0.162
Raw	14566.463	21429.657	13359.000	13671.603	1624.977	1200.415

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5069.1	1680	2e-24	1408 - 1467	100	60 / 60	plus	None
MLOC	MLOC_5069.2	1840	2e-24	1568 - 1627	100	60 / 60	plus	None
JLOC1	JLOC1_3228.1	1651	8e-25	1378 - 1437	100	60 / 60	plus
Harvest21	ABC51142	555	3e-25	496 - 555	100	60 / 60	plus
Harvest35	U35_13432	754	3e-25	695 - 754	100	60 / 60	plus

Contig Sequence (754 bp)

>U35_13432 754 Hv_44K_v2
CACGCGTCCGGTCCAAGGCGGTTGCTATTTTCCATGAATCATTTGATCCTATCATTCAAG
CTGCTACCGGGCGAGACCTTATTCCAGCCATGGTCTACGGGAGGAGCGTAAGGGATCAAG
ATTACACAGGGATGTACTGTGCCGTATTGACTGTTGGCAAGACGGTGGTTTCTGCTGGCC
TCTTCCGTGTCATGGGTTGCGTAGCCGCGGAGCTCCCCTTGGTCGCCACCACCAGGGATA
ACCAAGGCTTGGGGTACTTCCAGGCGCTGTTTGCATGCATCGAGCGGCTGCTGTCGTCGC
TGAAGGTGAAGCACTTTGTGCTGCCGGCAGCGGACGAAGCGGTGTCGATCTGGACACAGC
GGTTCGGGTTTGGCAGGATAACCCAGGATGAGCTGCTGGAGCACCTCAAGGGCGGGCGGC
CGACGGTGTTCCACGGCACGTCGACCCTGCACAAGCCAGTCCCGGTGGAGGTTGAGGCGG
AGGCGGATGCGCGGGGGCCCGAGGAGGAGGACGAAGCGCCGGTGCCGACGGCCTTGGAGT
GAGGGGCTATTGGCTAGCTAGCTAGCTGTTTCCTTATTTTTTGGGGTGGGGGAGGATGGA
TTTGTAATGGTGTAATGTAGAGACAGGGATATTTTGTTTTTGGTTTGGTGTCTAGTAGTG
TAGGATGGTGTGTTTTGTTGAGGGGTGATGGATCCTTGCTCGTATGTTCGGTGTCTAGTA
GTGTAGGATGGTGTGTTTTGTTAGGCAGTGAAGA

Homology of Contig U35_13432 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g51450.1	800	1e-63	protein\|PHD-finger domain containing protein, expressed
Brachypodium v1_2	Bradi1g29167.1	825	6e-83
Arabidopsis v10	AT2G27980.1	1072	1e-53	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain \| chr2:11913950-11919741 REVERSE LENGTH=1072