- Probe CUST_38749_PI390587928
- Source Contig U35_25419
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38749_PI390587928 | Hv_44K_v2 | GGATAGAGATGTCTCTTATCATAGAAGAATATTGTGTAGTGCCCAAAACCTTGGAAAAAA | 300 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.529 | 0.645 | 1.527 | 2.402 | 1.402 | 0.790 |
| Raw | 294.620 | 570.073 | 1169.659 | 2752.597 | 589.728 | 362.784 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC23134 | 397 | 3e-25 | 301 - 360 | 100 | 60 / 60 | plus | ABC23134 |
| Harvest35 | U35_25419 | 397 | 3e-25 | 301 - 360 | 100 | 60 / 60 | plus |
Contig Sequence (397 bp)
>U35_25419 397 Hv_44K_v2 GGCAGCGCAGAGCGCGAGCGCCACTGTGCCGCAGGTGGCACAGGACGATGGCGAAATTGG GCTGGAGCTGACCCTCGGGTTCGGGCCGGCCACGCGCGTGCTGAGGTCGCCGCCGCCGCC AGCAGCGGGAGCCGTGTCCGGCCATATCGGCCTGCTGCTTGGGCTGACGGTGTGAGACCA GAGACGCGGCGACAGTGTCACAGTGCCGTCCTTCATTCTAGTAGTAGCTGTCTAGCTGAG AGAGACAGAGTCACAAGTGGCAGTTTTGGGATTACCGTTCGTGTCATAGTGACACCTTTT GGATAGAGATGTCTCTTATCATAGAAGAATATTGTGTAGTGCCCAAAACCTTGGAAAAAA TTAAGATCATTTTTTTTTCGAAAAAAAAAAAAAAAAA
Homology of Contig U35_25419 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |