barSeed - Barley Seed Development Database

Probe CUST_38747_PI390587928

Source Contig U35_13441

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38747_PI390587928	Hv_44K_v2	GCCCTTTGTATATAGAACACTAGGTTAGGATTCCATTTATGATACGCCGCATTTTATTTG	650	GeneList: red MasterList: Transferase_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.069	1.350	1.350	0.964	0.417	0.505
Raw	303.531	585.683	526.353	589.042	87.570	118.819

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16945.1	2063	2e-24	9 - 68	100	60 / 60	minus	ABC23070
MLOC	AK355134	2342	2e-23	2283 - 2340	100	58 / 58	plus	ABC23070
JLOC1	JLOC1_11698.1	2243	8e-25	1996 - 2055	100	60 / 60	plus
Harvest21	ABC23070	729	3e-25	20 - 79	100	60 / 60	minus	ABC23070
Harvest35	U35_13441	729	3e-25	651 - 710	100	60 / 60	plus

Contig Sequence (729 bp)

>U35_13441 729 Hv_44K_v2
GACAAGAGTGTCTATGTGGGAAGCATGAACTACTACCATAGACCACTGAGATCTGGCAAG
TGGGCTGTCACTTATGAGGAATGGCCAGAAGAGGCTTACCCAAGTTATGCGAATGGGCCT
GGCTATGTGATCTCATCGGATATTGCACGATACATTGTATCTGAATTTGACACTCAGACA
CTTCGGCTATTCAAGATGGAAGATGTCAGCATGGGCATGTGGGTGGAGAAATTCAACATC
ACTCGTCGACCAGTAGAGTATCGGCACGATGTCAGGTTCTACCAGGCTGGTTGCTTCGAC
GGTTACATCACCGCACACTATCAGTCCCCCCAGCACATGATCTGCCTCTGGAGAAAATTG
CAGTCCGGCAGCACCCATTGCTGCAACGTGAGATGACGATTGCGAAAAATGTGTCTGGTC
CGAGAGGAAGAGATGATCGGCTCGCACGCACAGCTCGCGTATCAAACGTGGAAAATCATG
AGCTGCGCCGAGGGGCGGTTTGGCGAAGTCTGCTGGATTTATCATACCATTCTTTCATTC
TTTTGGTCGGTGGCCCGTTTCGAGCCGCTGCTGATTCTGACGCCTGTTGATGTTTTAGTC
CCGTCAAATTTTTCTTGACATAGGAGCTTTCAGGTGCTTGGGGGTATATTGCCCTTTGTA
TATAGAACACTAGGTTAGGATTCCATTTATGATACGCCGCATTTTATTTGACCAAAAAAA
AAAAAAAAA

Homology of Contig U35_13441 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g09670.1	656	1e-83	protein\|galactosyltransferase family protein, putative, expressed
Brachypodium v1_2	Bradi1g54650.1	654	8e-86
Arabidopsis v10	AT1G74800.1	672	8e-60	Galactosyltransferase family protein \| chr1:28102221-28104993 REVERSE LENGTH=672