barSeed - Barley Seed Development Database

Probe CUST_38741_PI390587928

Source Contig U35_13447

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38741_PI390587928	Hv_44K_v2	AAGGTGGGGAATAACAGAAGCTGTACAGTCCATGATGAAGATAAAACATCAGGGATCTCC	565	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK253123.1	1978	2e-24	1722 - 1781	100	60 / 60	plus	ABC48259
MLOC	MLOC_67736.1	2851	2e-24	1914 - 1973	100	60 / 60	plus	ABC48259
MLOC	MLOC_67736.2	2971	2e-24	2034 - 2093	100	60 / 60	plus	ABC48259
JLOC1	JLOC1_44750.2	4048	8e-25	1059 - 1118	100	60 / 60	minus
JLOC1	JLOC1_44749.2	2587	8e-25	1946 - 2005	100	60 / 60	plus
JLOC1	JLOC1_44749.1	2561	8e-25	1920 - 1979	100	60 / 60	plus
Harvest21	ABC26052	652	3e-25	566 - 625	100	60 / 60	plus
Harvest35	U35_13447	653	3e-25	566 - 625	100	60 / 60	plus

Contig Sequence (653 bp)

>U35_13447 653 Hv_44K_v2
AACAAAACAGAGGCCACAAGCCCGTAAATAAATAATGGACAAAGTCGAAAAATGGATAAC
TTCATGTGATGAGGAGCGATGGCTAGAAGAATACAGCAGGGATGAAAGAAGGTACTCGGT
AAGCAGAGGAGCCCACAGGCACTTGAAACGCGCAGAACGTGCTAGAATTATAGCAAACAA
AATTCCAGGCCTGGTAGAGCTTCTAATTGCAAAGACAGAGATCTGGGAACATGGGAGAAA
GAAGATCTTCTACTACGACGAGCTTCCCCTTTTGGAAATGCTGAAACAGTACATGTTAAC
ACTGAAGGAAAAGGAAGAAGAGAGATGCAGGCAACGGGAGAATAAAAAGGTACAGACTCA
ACTTGTAAAGAGGAATGAAAATTCATTTTTATCAAGGCCCAACACAGGCTGCAGTCGTCC
ATCCAGCAGAGGCTTCAATACCAGCCACCGCTCTACCTCCTTTTCAAGCCACAGAGTTTC
TTCTGTAGATCAACAACCTATTTCAGATAACTCAGCTGAAAAAGATATGCATATAAGAAA
AGTTAGGGACAGAAGTATGCAAAGTAAGGTGGGGAATAACAGAAGCTGTACAGTCCATGA
TGAAGATAAAACATCAGGGATCTCCACANAACAAGGCCTTTCATCAATTTAAT

Homology of Contig U35_13447 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g41210.1	592	2e-93
Arabidopsis v10	None