barSeed - Barley Seed Development Database

Probe CUST_38730_PI390587928

Source Contig U35_25429

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38730_PI390587928	Hv_44K_v2	CGTGAACTTGTTTGTCCTTTTTAGACCAGGCATCAGTAAATGTGTCCTTTGTCTAAAAAA	860	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.314	0.438	1.121	1.833	1.167	1.008
Raw	12.835	28.662	67.622	163.356	38.629	36.215

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70124.1	1497	3e-21	1439 - 1492	100	54 / 54	plus	ABC22535
Harvest21	ABC22535	931	3e-25	12 - 71	100	60 / 60	minus	ABC22535
Harvest35	U35_25429	931	3e-25	861 - 920	100	60 / 60	plus

Contig Sequence (931 bp)

>U35_25429 931 Hv_44K_v2
GGGAAGAGCGTCCCCTACCCGCTTCCGTCCCGGCCATTGACCCCCAACGGCGTGGTCTCG
CATTCCGGGAGGCTCTGGTGGGTCGACCTCTCCTGGGGCCTCCTCACCTGCAACCCCTTC
GCGGACGCGCCCGTGCTCAGCTTCGTCCCACTCCCGCCGCGCAAGGCGCTCAAGTACAGG
GAAGATTGTGCAGTGCTCGACAAGTACCGCCGCGTGGCTGTCAGCCGCGGCAAGCTGCGG
TTCGTGGACCTGTACAAGAATCGTAACAGCTTCGGCTCTGCACAAATCAGCGTGTGGACG
CTCGCCGATCCGGACTCCACCGAGTGGACGCTGGAATATGAAGCGACCTTTTCGGAGATC
TATGATGATGCGAGCTTCAAGGCGACTCGTCTGACAAGGCAGCTCCCGGTGCTCGCGCTC
ATCCATCCCAGGGACCCCGACGTGGTCTACTTCTTCCTGGACAGGCACCTGTTCGGCGTC
GACGTGCCTGACCGCGAGGTCGTGCAGTGTGAGCTCTACGAGCTGGTTGAGGAGCTATCC
AGCGAACACATTGCCACCCGTTTCGTTCACGCTTGGAGGCTGCCACCGGCTCTCCGCTCA
GCTGCGGATGATGTTGTGGAGAAGCAAAACGCAGGAGGAAATCGAGAAATCCTTGATGCC
ACTCCAGTCTTGACTTGCCGAACTGAAGTTGAAGTCGGTGGCGGCAACACATTTGAGTCC
AAGCGGCGTAGGCTAGAGTGATCTGTTCTTGCAGTATCTCTGTTTCAATTCTTGTTAGCA
TGACTTTCCATGAAATTTGTACACTTTGATAGTAGAGAGCTGGTAACCCCAGCATGTTAT
CGGATACCACCTTTTGTATCCGTGAACTTGTTTGTCCTTTTTAGACCAGGCATCAGTAAA
TGTGTCCTTTGTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_25429 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g14180.1	443	1e-76	protein\|expressed protein
Brachypodium v1_2	Bradi2g08360.1	718	1e-84
Arabidopsis v10	None