barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_38728_PI390587928Hv_44K_v2GTACGCTGTTTATCGTCACTGTGTTTTCTCTCTCGACAAAAAGCTGGTGTTGCTTGTTGA266GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_71416.18652e-24682 - 74110060 / 60plus ABC02243 ABC33076
MLOCAK35420317587e-231635 - 16949859 / 60plus ABC01542 ABC01543 ABC02243 ABC47643
MLOCMLOC_45271.12427e-23122 - 1819859 / 60minus ABC02243
JLOC1JLOC1_47464.19718e-25699 - 75810060 / 60plus
JLOC1JLOC1_29391.13984e-23278 - 3379859 / 60minus
Harvest21ABC022436823e-25476 - 53510060 / 60plusABC02243
Harvest21ABC022446291e-23486 - 5459859 / 60plus
Harvest35U35_374016163e-25267 - 32610060 / 60minus
Harvest35U35_146466723e-25473 - 53210060 / 60plus
Harvest35U35_146456221e-23477 - 5369859 / 60plus



Contig Sequence (616 bp)

>U35_37401 616 Hv_44K_v2
GGCAGCGCCGATGCCCAGCCCGGCGACGAGCGCCTTCTCGGACCGCATCTTGTTGAGCTG
GTTCAGCGCCGGCTGGAGGATGTTGTAGAGCACCCACCCGAGCGCGGGCGCCACCACGAA
GAGCAGGAGTAGGCCCCGGTTGTCGTCCGCGGGCGCCGCCGCCGCCACGTCCGCGATCCG
CTGCGACGCCATCGCCGCGTCCGACGAGGCCAGCGAGGTGAAGAAGGCGCTCGCCATGGC
AGCGGCCGCCCTTTTTTTTTTTTTTTTCAACAAGCAACACCAGCTTTTTGTCGAGAGAGA
AAACACAGTGACGATAAACAGCGTACATATTGTTGGCCGTATAACGCGGCCCACACACAA
GCATAGCAACACGATGACTGCTCATCTCATCTGAGCTTTATTCTAGGCGGCACACCTCGT
CCGAGCCTGAAGCCCTGAAGCGATCAGTGCTTTTTGCATGGGCCACCGCAGGTGCCGTCG
ACGGTGCTCTTCATGTCGGCGCAGCGGAACGTCTTGTGAGGGCTCGGGGTCACCACGCGG
CAGGCGGAGCAGCCTTTGGGGCACTTGGGGTGGGCGTCGTCGCAGACGTCGACCCCCGAG
AAGGACCTGCAGTTGT



Homology of Contig U35_37401 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None