barSeed - Barley Seed Development Database

Probe CUST_3871_PI390587928

Source Contig U35_116

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3871_PI390587928	Hv_44K_v2	CCAATGTATTTGTTGATGGCTATGTAATTTAAGCTGGGCATTGCACAAGAGCTAAATAAA	1394	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.801	1.385	1.342	0.690	0.377	0.502
Raw	73.031	54.458	48.269	38.930	6.843	10.696

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC00299	1465	3e-25	1395 - 1454	100	60 / 60	plus	ABC00299
Harvest35	U35_116	1465	3e-25	1395 - 1454	100	60 / 60	plus

Contig Sequence (1465 bp)

>U35_116 1465 Hv_44K_v2
GCTCCTCCCTCCACCCGTGTACACGCATCGCTCTTTCGATTTTCGTTTGCATCTGTTTCT
TGTTGGTGCTGCTCTAGATGGTCGATGAGATGTTTCTGCGGCGGTGATGACAAATTTGTG
GACTAGAGTTTCTGATCCCGCCTCTTCAGCGGCATCTGCAGACAACCCCTTGGCTGTCTG
AGCACCCAGATCCCATCCCATCGATCGATTCGTTCCTTCTTTAGATTTCTTTTCATTCGG
TGTTCTTCTCTGCGTTTTCACCGTCGGCTGGTTTGGGGGTGGTTCGAGTAGCGGTGATGA
CATCTATGTGGACTAGAGTTTCTGATGCTGCCTCTTCAGCAGCGCCTTTGAAGACAAACC
CTTGGCTGTCTGAGCTCCCAGATCCCCCAAATCGAGTTTTTCTGTTTGTGTTTGCCCTGT
TGATTTTTGTTCTTGGTTTTGAAGTTGATGCGCGCGTCCATTACCGATTCCGTGGGATGA
TTTGAGTTCCTCGCGGGGTAATGGCTCGGACGCTAGACGCGATTTTGTGGTGATATCCTG
ATTGGTGGCGTTCTCGGTGCCAGCTTATCCTGGAAACGCCTCATATATTCACCAACTTTG
TACTTCTTTCATGTTTTTGGGATCTAAATGATGCGAAACTACGAAAGGGAAATCGTCCGT
TGAGGCGGCCATGTCAGTTCTTTCACATTGATAGGAAGATCTGATAGATTCCACAATTGT
CTTAAAAAACTTTTTCTTGTTTTCGATCTGTTAAGTGTGGGTGTGGATGATGAGATCACA
AGTAAAAATACAGTTATCCCTGTCTTACTTCCTTTGAAGGGTGCTGAGAATACTTTGAAT
CTGACACAATGTACTCTGCACTGATCACTTGTTTTTGGCTTTTGTTTTGAGTGTTAAGTT
GATCTTGGCCGGTGATGATTAGTATTGGTTGCTGAACAGTCAACATAGATTGTCTGTTCC
ATGACGACATTTTCGAACTAGGACGGTCTGAGGCCACCTTGATCACTATACTTTTATGAC
TAACCATTGTTCTTCTGTTTTGCTTGTTTTTTTTCTTCTGTTGTTTGTGGTTGCAGGGCG
CTTCTCCTGATGGCTGTAGCCTATTTGGCACTTGACAAGAAAAGTAGGAATAGCATTATG
TCTACATGAGCTATAGCCTGGTGATGTTACACCTATTTGTAATTGTATTTTGCAAGGAAG
ATGTCCTTAGGTTAGATTGTAATGTAAGTCTGTTTTGAGTGTTCCAGCATTGTAACTTCG
GTATTTTGTTGGAATTGCACATAATTACACAACAGAGTTGAGTGAACTACATCATGATGT
TATCATGTTGAGACAATTCAGACCCATACTCTGTAACTCAACTATTATGTGTTCCAACTT
GGTTCATTTTTTTTCCAATGTATTTGTTGATGGCTATGTAATTTAAGCTGGGCATTGCAC
AAGAGCTAAATAAAAAAAAAAAAAA

Homology of Contig U35_116 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None