- Probe CUST_38717_PI390587928
- Source Contig U35_13457
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38717_PI390587928 | Hv_44K_v2 | AGATAAAGAAGTACTTGCGCACACAAGCATCCCCCGTCGCGACCATGGTGTTCCACGGCA | 305 | GeneList: floralwhite MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.553 | 0.547 | 1.559 | 1.519 | 1.070 | 1.113 |
| Raw | 42.128 | 60.561 | 161.792 | 225.548 | 60.542 | 70.855 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_11141.1 | 2860 | 7e-23 | 1119 - 1178 | 98 | 59 / 60 | minus | ABC29936 |
| JLOC1 | JLOC1_7350.1 | 2296 | 4e-23 | 1110 - 1169 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC24072 | 511 | 3e-25 | 306 - 365 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13457 | 511 | 3e-25 | 306 - 365 | 100 | 60 / 60 | plus |
Contig Sequence (511 bp)
>U35_13457 511 Hv_44K_v2 GGAGACCTTCATAGGCACCTCGCTGTACGCCGGCAAACCGCTTGGGGCGACAAAGCTACC ATTGGTGTACGGCGGAGACGCGGGCTCAAACATCTGTGAAGCCGGGAAGCTCAATCCCAC CATGGTTGCCGGGAAGATTGTTTTGTGCGACCCCGGAGTGAACGGGCGGACAGAGAAAGG ATTTGCCGTTAAACTCGCCGGTGGCGCCGGAGCAGTCCTCGGCAGCGACGAAGCACAGGG CGAGCAGGCCAGAACCAGCGCCCATGTCATCCCCGTCAGTGCCGTCACATTTTCCGCCGC CGAGAAGATAAAGAAGTACTTGCGCACACAAGCATCCCCCGTCGCGACCATGGTGTTCCA CGGCACGGTCGTCGGACGGTCGCCCCCTTCGCCAAGAATGGCATCCTTCTCCAGCCGCGG CCCGAGCCGTCTCGTCCCGGAGATCCTCAAGCCGGACGTCACGGCCCCCGGCGTGGACAT ACTCGCCGCTTGGGCAGGCGTCACCTCGCCC
Homology of Contig U35_13457 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi3g57130.1 | 781 | 2e-71 | |
| Arabidopsis v10 | None |