- Probe CUST_3870_PI390587928
- Source Contig U35_117
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3870_PI390587928 | Hv_44K_v2 | AACAACTAGCAAATATCAATGAGCAATCCCGATGCCCAGCCATCCAAACCATTGTGCATG | 630 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.013 | 0.013 | 0.235 | 2.589 | 7.140 | 10.161 |
| Raw | 6.327 | 8.347 | 182.758 | 2753.233 | 2878.710 | 4506.577 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251750.1 | 1148 | 2e-24 | 672 - 731 | 100 | 60 / 60 | plus | ABC00209 ABC28950 ABC32362 |
| MLOC | MLOC_66711.1 | 2132 | 2e-24 | 1305 - 1364 | 100 | 60 / 60 | minus | ABC00209 ABC28950 ABC32362 |
| JLOC1 | JLOC1_43995.1 | 1222 | 8e-25 | 436 - 495 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC52948 | 587 | 3e-25 | 405 - 464 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52934 | 599 | 3e-25 | 528 - 587 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52916 | 427 | 3e-25 | 341 - 400 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52759 | 618 | 3e-25 | 345 - 404 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00804 | 1131 | 3e-25 | 620 - 679 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00533 | 897 | 3e-25 | 395 - 454 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00521 | 1081 | 3e-25 | 620 - 679 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00209 | 1153 | 3e-25 | 658 - 717 | 100 | 60 / 60 | plus | ABC00209 |
| Harvest35 | U35_50655 | 599 | 3e-25 | 528 - 587 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50555 | 618 | 3e-25 | 345 - 404 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_331 | 584 | 3e-25 | 402 - 461 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_199 | 1131 | 3e-25 | 620 - 679 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_117 | 717 | 3e-25 | 631 - 690 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_67 | 1153 | 3e-25 | 658 - 717 | 100 | 60 / 60 | plus |
Contig Sequence (717 bp)
>U35_117 717 Hv_44K_v2 GCCAAGAAACACTAGTTAATACCAATCCACCATGAAGACCTTCCTCATCTTTTCACTCCT CGCCATTGTGGCAACAAGTACCATTGCACAGCAACAACCATACCCACAACAACCACAACC ATTTCCACAACAACCCATCCCACAACAACCACAACCATACCCACAACAACCACAACCATT TTCACAACAGCCCATCCCACAACAACCACAACCATACCCACAACAACCACAACCATTTCC ACAACAACCCATCCCACAACAACCACAACCATACCCACAACAACCACAACAACAACCACT TCCCCAACAACAACCATTTCCGCAGCAACCACAACTTCCCCATCAACATCAATTTCCACA GCAGCTGCCACAACAACAATTTCCGCAGCAGATGCCACTCCAGCCGCAACAACAACCACT TAACACAACAACCATATCCGCAACAGCAACCATTGGCACAACAACAACCTTCTATAGAGG AACAACATCAATTGAACTTGTGCAAGGAGTTCCTCCTACAACAGTGCACCCTGGACGAGA AGGTACCATTACTCCAGTCAGTGATCTCGTTCCTCCGACCACATATCTCGCAACAAAACA GTTGCCAATTGAAGCGACAACAATGTTGTCAACAACTAGCAAATATCAATGAGCAATCCC GATGCCCAGCCATCCAAACCATTGTGCATGCCATCGTCATGCAACAACAACAACAAC
Homology of Contig U35_117 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |