barSeed - Barley Seed Development Database

Probe CUST_38709_PI390587928

Source Contig U35_25439

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38709_PI390587928	Hv_44K_v2	AGCCGCCTTAAGTGCTCTCACCAACAGTCTGGAAGGTATGCTATTTGGAAGATTATTGGT	474	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.078	1.091	1.512	1.115	0.545	0.438
Raw	18.910	27.087	35.535	39.196	6.472	5.964

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359736	2354	2e-24	658 - 717	100	60 / 60	plus	ABC10520
MLOC	AK363036	1866	2e-24	434 - 493	100	60 / 60	plus	ABC10520
Harvest21	ABC23172	540	3e-25	475 - 534	100	60 / 60	plus
Harvest35	U35_25439	534	3e-25	475 - 534	100	60 / 60	plus

Contig Sequence (534 bp)

>U35_25439 534 Hv_44K_v2
CTCAGATCCCCTCCCTCCCCCCTCTGGCATCGCTTTCCATTTTCCGAATCCCAATCCCAA
TCCCTCGGGGCCGCTCTGGTTTCTTCTGGAGATGCGGTGGAAGCTGAGCACCTCCGCGTA
CAAGCGCGTGCCGTCCCGGGACGCCGCCATGGACCCCGACCTCGAGACGCCAGCGAGGGC
GCCCGACGGAGGCGCAGGGGCAGCGGCAGGCCCGTCGTGGCGCAGGTCGCTGCCGCACGT
GTGCGTCGCCACCGTCACCTCCTTCCTCTTCGGATACCACACAGGGGTCGTGAACGAGCC
GCTCGACAGCATCTCCGCCGACCTCGGATTCGCCGGAAACACGCTGGCCGAAGGGCTCGT
GGTCAGCATATGCCTGGGGGGAGCGTTCTTCGGATGCCTGTTCAGCGGCTCCGTCGCCGA
CGGAATCGGCCGGCGCCGCGCTTTTCAGCTCAGTGCGCTGCCCATGATCATGGGAGCCGC
CTTAAGTGCTCTCACCAACAGTCTGGAAGGTATGCTATTTGGAAGATTATTGGT

Homology of Contig U35_25439 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g17500.2	482	6e-72	protein\|transporter family protein, putative, expressed
Brachypodium v1_2	Bradi3g10210.1	484	1e-74
Arabidopsis v10	None