barSeed - Barley Seed Development Database

Probe CUST_38701_PI390587928

Source Contig U35_13460

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38701_PI390587928	Hv_44K_v2	TTGTACTGGCAAACTATTGGAATTTATTCTTTCAGGCGCAATCAAATGCGCTAGCTGAGT	482	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.748	2.123	1.014	0.884	0.333	0.656
Raw	151.450	178.543	76.800	104.990	13.884	29.099

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_35803.2	1024	8e-25	854 - 913	100	60 / 60	plus
JLOC1	JLOC1_35803.1	1036	8e-25	866 - 925	100	60 / 60	plus
Harvest35	U35_13460	545	3e-25	483 - 542	100	60 / 60	plus

Contig Sequence (545 bp)

>U35_13460 545 Hv_44K_v2
GCTCGAGCGGCCGCTAATTCCCCTTCCCTTCTTTGGTTGTGGAATCGGATGGTGTTGGTT
TCGTGTGCCCGTTAATCTGGTACATAGCAGCTCTTCTTTATTGCTGCAAGTACTACAACC
GTGACCCTCGAGAACGGCCTGGGCTTGCCGCTTCTGCTCTTCTGGCAATCATGTTTACAG
CAGCGACTATCATTACCCTTTCTGTTTTACTGGTAATGTGTGCACACAAACGTTTCTTGA
ATAGCTGTGGTAGCTGACTGAAGAATATACAGTAGCTAGCTGCAAGATATTCGATGCATA
CCCTCGAGGAATGAAGTGCTTGACAGAAATACTCTCTTTAGGTTCCCTTGTTAATCAATT
GATTAAATCCCCAGGAGAAATCGAAGGATTGCCCTTCGCATGATAGCCTGCTATCTCTTG
CTGTGGAGTGTAGATTACTGTACAATTTTGTGCTGACAGATGAACCTGTTGCGTAACATT
TTTTGTACTGGCAAACTATTGGAATTTATTCTTTCAGGCGCAATCAAATGCGCTAGCTGA
GTAAT

Homology of Contig U35_13460 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None