barSeed - Barley Seed Development Database

Probe CUST_38694_PI390587928

Source Contig U35_13467

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38694_PI390587928	Hv_44K_v2	TAGTCACTGAGACATCAAGATTTTGGACTCGGAACCGAAGGTGATTTCACGAGAAAAACA	802	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.747	1.736	1.141	0.890	0.314	0.387
Raw	199.523	316.473	180.177	223.420	27.995	36.141

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61810.3	1520	2e-24	42 - 101	100	60 / 60	minus	ABC24209
MLOC	MLOC_61810.4	1526	2e-24	42 - 101	100	60 / 60	minus	ABC24209
MLOC	MLOC_61810.2	908	2e-24	115 - 174	100	60 / 60	minus	ABC24209
JLOC1	JLOC1_40414.3	853	8e-25	748 - 807	100	60 / 60	plus
JLOC1	JLOC1_40414.2	950	8e-25	845 - 904	100	60 / 60	plus
JLOC1	JLOC1_40414.1	858	8e-25	753 - 812	100	60 / 60	plus
Harvest21	ABC24209	907	3e-25	46 - 105	100	60 / 60	minus	ABC24209
Harvest35	U35_13467	907	3e-25	803 - 862	100	60 / 60	plus

Contig Sequence (907 bp)

>U35_13467 907 Hv_44K_v2
GCTGTTATGGCATCAAGAATATCTTCTTGGTCGAGAGACGAGCTTACAAGCTCAAGGCTG
ATCGAAGTTTAAGGCAAAATGAGGGTGTTAAATTGGAGCGTTTGAGAATAGATATTGAGG
ATTTGAACCTGCATGGAGTCCAAGCGTTGAGTGGGGGTCAGTATCTAGCAATTGGAAAAC
ATCTATGTGGGCCTGCAACAGATATGACCATAATGTGCTGTCTTCATGAACAACACAATC
GTACAGAAGAGAAAGGCCACAACAAGCACCATCTCAGGGGCCTTGCTTTAGCAACCTGCT
GCCACCATCTCTGTCAATGGAAGCATTATGCAAATAAATCTTTCCTCTCTGGACTAGGGA
TTGCGGAGGAAGAGTTCCATGCCATGACATGGTTTAGCAGTTGGGCTGTGGATGGTGACC
ACAGCTCCCAGGACTCTTTGGAGGCTGAAGACTTATCTTCCGAAGGCAGAGAAACTGAGA
AGCCTGATCCGGAGATTATTGGAGTCGAGAGAATAATCCGCAGTATACCTGGCGTCGAGA
GGAGCGCCCTCGGATTCATGTGCAAAGATATCATTGACACCGGGAGGCTGCTGTGGCTTA
AGTCCAAGGGTCTAGATGCAGACCTTGTAAGATATGTTCCGTCAGATATTTCGCCAGAGA
ACCATTTGCTCATCGCCAAGTGTAGGTCTTGACTTATATAAAAAAAAGTGTAGTCCTATA
TTGGGATGTTCAATTTTTATCTCGACTAGGAGAAACATGGCACAGTTTTGTTGTAAAAGC
TTTGTGTCTGCAAATTGAGATTTAGTCACTGAGACATCAAGATTTTGGACTCGGAACCGA
AGGTGATTTCACGAGAAAAACACCGCCAGGCCATCCAGATTCGGACGATGAGCTCAAGAT
GCCTCTC

Homology of Contig U35_13467 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi1g02780.1	451	2e-129
Arabidopsis v10	AT4G01880.1	453	3e-82	methyltransferases \| chr4:810810-812882 REVERSE LENGTH=453