barSeed - Barley Seed Development Database

Probe CUST_38685_PI390587928

Source Contig U35_37420

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38685_PI390587928	Hv_44K_v2	ATCATCAAGGACATCATCAACAACATGAAGCGGCTCGACGGCGACATCGAGTCCGGCAGC	561	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73746.1	2978	2e-24	2196 - 2255	100	60 / 60	plus	ABC06354
JLOC1	JLOC1_49111.1	3001	8e-25	2190 - 2249	100	60 / 60	plus
Harvest35	U35_37420	648	3e-25	562 - 621	100	60 / 60	plus

Contig Sequence (648 bp)

>U35_37420 648 Hv_44K_v2
GTCCACGGCCACTTCCTCTACCTCACCAAGAAGTGGCAGAAGAAGTCGACGTGGATGTAC
GTGGCGGCGCCGATGGTCCTGTACGCGTGCGAGCGGCTGGCGCGGGCGCTCCGGTCGAGC
GTGCGGCCGGTGAAGATACTCAAGGTGGCCGTGTACCCCGGCAACGTGCTGTCGCTGCGC
TTCTCCAAGCCCCAGGGGTTCAGGTGCAAGAGCGGGCAGTACATCTTCGTCAACTGCGCC
GCCGTGTCGCCGTTCCAGTGGCACCCGTTCTCCATCACGTCGGCGCCGCACGACGACTAC
ATCAGCGTCCACATCAGGACGCTCGGCGACTGGACCCGGGAGCTCAAGAGCGTCTTCTCC
AAGGTTTGCAGGCCGCCGACGGACGGGAAGAGCGGGCTGCTCCGCGCGGAGTACGCGGGC
GACGGCGGCGCCATGCCCAGCCCGAGCAGCTTCCCAACGGTGCTGATCGACGGGCCGTAC
GGCGCGCCGGCGCAGGACTACAAGCAGTACGACGTGGTGCTGCTGGTGGGGCTGGGCATC
GGGGCCACGCCCATGATCTCCATCATCAAGGACATCATCAACAACATGAAGCGGCTCGAC
GGCGACATCGAGTCCGGCAGCCCCAGCGACAGGAGCGTGTCGGCGGCG

Homology of Contig U35_37420 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g33120.3	627	7e-125	protein\|respiratory burst oxidase, putative, expressed
Brachypodium v1_2	Bradi4g17020.1	925	2e-126
Arabidopsis v10	AT5G47910.1	921	4e-99	\| Symbols: RBOHD, ATRBOHD \| respiratory burst oxidase homologue D \| chr5:19397585-19401768 FORWARD LENGTH=921