barSeed - Barley Seed Development Database

Probe CUST_38683_PI390587928

Source Contig U35_37422

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38683_PI390587928	Hv_44K_v2	TACTATTGGCTGACAAAGGGGAGACGCTGAAAGCCTCTTACATCCACCTGTTCATTCTTT	104	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15181.4	2596	3e-21	1883 - 1936	100	54 / 54	minus	ABC10158 ABC20145
MLOC	MLOC_15181.6	2183	3e-21	1510 - 1563	100	54 / 54	minus	ABC10158 ABC20145
JLOC1	JLOC1_10400.1	5512	2e-21	658 - 711	100	54 / 54	plus
Harvest35	U35_37422	243	3e-25	105 - 164	100	60 / 60	plus
Harvest35	U35_21307	1248	6e-22	621 - 674	100	54 / 54	plus

Contig Sequence (243 bp)

>U35_37422 243 Hv_44K_v2
AACTTCTGGGGGTGGTGAGGTTGGAGAAAAGACCGCTACTTCAGCTTCTGTTACCAAGTA
CAACTCAGGAATCAGCTATACCAAAGATGATTTTTCTGCCGCCTTACTATTGGCTGACAA
AGGGGAGACGCTGAAAGCCTCTTACATCCACCTGTTCATTCTTTCTCTGCGCGGTGGCGG
CCGAGGTAATGCACAGGTTGAAAACTTTTTTTTTCTACTCCACCATTGGGAGCTCCCACG
CGC

Homology of Contig U35_37422 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None