barSeed - Barley Seed Development Database

Probe CUST_38675_PI390587928

Source Contig U35_13472

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38675_PI390587928	Hv_44K_v2	CACTTCTGAAGCAAGAGGAGGATCAAGATGAAGATGATGGAATTTGGAATATATCAATGG	430	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53998.1	3373	2e-24	2092 - 2151	100	60 / 60	minus	ABC14129
MLOC	MLOC_53998.2	3372	2e-24	2092 - 2151	100	60 / 60	minus	ABC14129
MLOC	MLOC_53998.3	3372	2e-24	2080 - 2139	100	60 / 60	minus	ABC14129
MLOC	MLOC_53998.4	3370	2e-24	2078 - 2137	100	60 / 60	minus	ABC14129
JLOC1	JLOC1_34734.1	3488	8e-25	1296 - 1355	100	60 / 60	plus
Harvest21	ABC49164	512	3e-25	402 - 461	100	60 / 60	plus
Harvest35	U35_13472	541	3e-25	431 - 490	100	60 / 60	plus

Contig Sequence (541 bp)

>U35_13472 541 Hv_44K_v2
CCCCGGGCTGCTGAGAGTNCGGCACGAGGACTAATTTTCGTTAAAGCATTGTACAATGCT
CTTGATTTTGCCGAGACAAATTTTCAGAATGAATCAGAGAGGAACTACATAATGAAGGTA
GTTTGTGAGACTGCCATTTCTAAAGAGGCTGATATTAGGAAGGCTGCATTTGAGTGTTTG
GTCTCCATAGCATCAACATACTATGATCTTCTAGAGCCCTACATGCAGACATTATTTGAG
TTGACAGCAAATGCTGCCAGGGCAGATGAAGAACAAGTAGCACTTCAAGCTATTGAGTTC
TGGAGCACAATATGTGATGAAGAAGTTGCAATTCAAGAAGACGCTGAAGAACCTGGTGAT
GTTAGTTCTGCATGTTATTTCCATTTTATTGAAAAGGCCCTTCCTTTGCTTGTCCCTATG
CTTTTAGAAACACTTCTGAAGCAAGAGGAGGATCAAGATGAAGATGATGGAATTTGGAAT
ATATCAATGGCGGNGGGCACCTGCCTTGGGCTTGTTGCAACGGCTGTCAAGGATGCCATT
G

Homology of Contig U35_13472 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g18350.1	871	2e-72	protein\|importin subunit beta, putative, expressed
Brachypodium v1_2	Bradi1g65390.1	870	3e-81
Arabidopsis v10	AT3G08943.1	871	4e-57	ARM repeat superfamily protein \| chr3:2719198-2721911 REVERSE LENGTH=871