barSeed - Barley Seed Development Database

Probe CUST_38668_PI390587928

Source Contig U35_13476

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38668_PI390587928	Hv_44K_v2	GGAAAATAATTGCCAATTCACATTCATAAAGTTTGAGTCAATGAAAACGGCACCTATCGA	553	GeneList: plum2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.040	0.282	1.892	2.930	1.274	1.400
Raw	47.728	575.687	3100.243	6832.727	1195.820	1392.226

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366381	4363	2e-24	2927 - 2986	100	60 / 60	plus	ABC16075 ABC21542
MLOC	MLOC_64506.2	4305	2e-24	2754 - 2813	100	60 / 60	plus	ABC16075 ABC21542
JLOC1	JLOC1_42366.2	4369	8e-25	2755 - 2814	100	60 / 60	plus
Harvest21	ABC21542	632	3e-25	554 - 613	100	60 / 60	plus	ABC21542
Harvest35	U35_13476	632	3e-25	554 - 613	100	60 / 60	plus

Contig Sequence (632 bp)

>U35_13476 632 Hv_44K_v2
GAGAAGTCCCAAGCCTGCCGCGGCACGCCCACACGACCACCCTCACCGTGAGTGCCTCGG
GCTACCACCTCAGCCTCATTGGCATCAGCCTAGGGAACAAGCGTCTCGACATCGACAGAC
ATATCCTCACCAGCCATGGCTGCAGCATCAACCCCGCCGAGACGATCACCAAGATCGCGG
AGCCAGCATACATCATCGTGGCGAGAGAGCTGATGGCACAGATGAATGAGCTAGGATCAA
AGCAGGTGAAGGGGCCGCCCAGCAGCCCGCTTGTCTTCAACAAGATTTCTAGGAGGGTGC
GGGCGCGGCTCCCCAACATGGTGTTCCACTTTGCAGATGGTGGTGACATGTGGTTCACGG
CGGGGAAGCTGTTTCAGGTGATTGGCACGACAGCACGGTTCTTGGTCGAGGGCCATGGGT
CCCACCGAACGGTGATCGGCGCAGCGCAGCAGGTGAACGCACGGTTCATCTTCAATGTCG
CTGCGGGGAGGCTGACCTTCGCGGAGGAGCTGTGCAGCAGGGAGGCAGCGTAGGTCTGTT
CATGTTGTATTCTGGAAAATAATTGCCAATTCACATTCATAAAGTTTGAGTCAATGAAAA
CGGCACCTATCGAAAAATAAAAAAAAAAAAAA

Homology of Contig U35_13476 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g01450.1	369	7e-66
Arabidopsis v10	None