barSeed - Barley Seed Development Database

Probe CUST_38666_PI390587928

Source Contig U35_160

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38666_PI390587928	Hv_44K_v2	ATTGATTTCAATTATGCCCCATTGGGATGCTTGGTTTAGGTGTCGACTTGACAGTATAAA	1043	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.542	2.472	1.489	0.566	0.194	0.160
Raw	138.679	156.869	79.798	43.433	4.531	3.382

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_160	1117	3e-25	1044 - 1103	100	60 / 60	plus

Contig Sequence (1117 bp)

>U35_160 1117 Hv_44K_v2
GGCCGCCTCCTCCCTTCTTCAGCCGAAGCGCCCACACGCCTCGACCCAAGGGATCCCAAT
GGCGCCGACGTCCAAGATGGCGCTGGGCATCAAGCGCGCGTCGCGGTCGCACTCCTACCA
CCGCCGCGGGCTCTGGGCCATCAAGGCCAAGAACGGCGGAGCCTTCCCAAAGGCCGAGAA
GCCAGCCGCCGTCGCCGAGCCCAAGTTCTACCCCGCCGACGACGTCAAGCCCCGCACCGC
CAGCACCCGCAAGCCCAAACCTACCAAGCTCAGGTCGACCATCACGCCCGGCACGGTGCT
GATCCTGCTCGCTGGGAGGTACATGGGGAAGCGCGTGGTCTTCCTCAAGCAGCTCAAGTC
TGGCCTGCTCCTCATCACTGGACCCTTCAAGATCAATGGCGTGCCAGTTCGCCGGGTGAA
CCAGGCTTATGTCATTGCCACATCCACAAAGGTTGACATCTCTGGTGTTAAGGTGGAGAA
GTTTGATGACAAGTACTTTGCTAGGGACAAGAAGGCCAGGGCAAAGAAGACTGAAGGGGA
GCTGTTTGAGACTGAGAAGGAGGCAACCAAGAACCTGCCTGACTTCAAAAAGGATGACCA
GAAGGCCATCGATGCTGAGTTGATCAAGGCTATCGATGCTGTCCCTGACCTTAAGAACTA
TCTTGGTGCCCGGTTCTCTCTCAGGGACGGTGACAAGCCCCATGAGATGACCTTCTAAGT
TGGTAGAAGTCCTGCGTTTTGAATGTGTTTTGCCTAGCTTGTTGCTGAAATTTGTACCCT
GTTACTTGACTTCGTATGTCTGTTGAAGTGAGAAGGTTAAGAGAATCGTTATCTGCAAAA
AAAAAAAAAAAAACTGCTTTTGCAGGTTTTCTTTGCGTTTGCTTAATGTAACACTTCGTT
GTGCGTTAAAAAAAAAAAAAAAAACGTTATTTGTCCTCATTTTCCTTCCATCTGCTGGAT
GTTTTTGCAGGTGATCACGTTGTGATTTAGGTTAATATATAGCGTTTCATGTTTATTGTG
CTTATTGTTCTGGGTTTAAGGCAATTGATTTCAATTATGCCCCATTGGGATGCTTGGTTT
AGGTGTCGACTTGACAGTATAAAAAAAAAAAAAAAAA

Homology of Contig U35_160 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g37862.1	220	3e-129	protein\|60S ribosomal protein L6, putative, expressed
Brachypodium v1_2	Bradi3g47410.1	220	6e-133
Arabidopsis v10	AT1G74050.1	233	2e-90	Ribosomal protein L6 family protein \| chr1:27847256-27848680 REVERSE LENGTH=233