barSeed - Barley Seed Development Database

Probe CUST_38661_PI390587928

Source Contig U35_16007

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38661_PI390587928	Hv_44K_v2	CTTGACCTTAGTTCCTGCCAATCATTTGTGCCACATTTTAGTCTGACAATCTTCTATAAA	1209	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65968.1	1270	2e-24	1194 - 1253	100	60 / 60	plus	ABC05654 ABC33634 ABC44997
JLOC1	JLOC1_43450.1	1484	8e-25	1217 - 1276	100	60 / 60	plus
Harvest21	ABC05654	1377	3e-25	1207 - 1266	100	60 / 60	plus	ABC05654
Harvest21	ABC33634	332	6e-22	220 - 279	97	58 / 60	plus	ABC33634
Harvest35	U35_34079	665	3e-25	261 - 320	100	60 / 60	plus
Harvest35	U35_16007	1324	3e-25	1210 - 1269	100	60 / 60	plus

Contig Sequence (1324 bp)

>U35_16007 1324 Hv_44K_v2
GGTGCATTTCACTCTCTTGGTATTACGTTACGTCTCTTCCTTCCTTCTTCAGTTCCCCAC
AGGCGAGAGGCCGCTCCGCTCGCTTGCCTTCCTCCTTCCCACCCCTCGACGATTCCTCGG
CGATGGGCGGCGCGGCGGCGGCGGCGGCGTCGGGCGCCGCCAGGTGGATCCAGCGGCTGA
GCGCGGCCAGGATCTCGACGGAGGCGCTGGAGCGGGGCCAGAGCCGCGTCATCGACGCCT
CCCTCACCCTCATCCGCGAGCGCGCCAAGCTCAAGGGAGAGTTGCTGCGTGCTATGGGTG
GTGTCAAAGCTTCTGCGACACTCTTGGGAGTACCCCTTGGGCACAACTCATCTTTCTTGC
AGGGGCCTGCATTTGCTCCTCCTCGCATAAGGGAGGCCATTTGGTGTGGAAGCACCAACT
CTAGCACAGAAGAAGGCAAGGAATTAAATGATCCAAGAGTGCTAACTGATGTTGGTGATG
TCCCTATACAAGAGATTCGTGACTGTGGTGTTGAAGATGACAGATTGATGCATGTAATCA
GCGATTCTGTCAAAACTGTGATGGACGAAGATCCTCTTCGGCCGTTGGTCTTAGGAGGCG
ATCACTCGATATCTTATCCAGTTGTTAGGGCTGTGTCTGAAAAGCTTGGCGGACCTGTTG
ACATTCTTCATCTTGACGCACATCCAGATATCTATGATTGTTTTGAAGGGAACACTTACT
CACACGCTTCTTCATTTGCAAGAATAATGGAAGGAGGTTATGCGAGGCGACTTTTGCAGG
TTGGACTTAGATCAATTACCAAGGAAGGACGTGAGCAAGGGAAGAGATTTGGTGTGGAAC
AGTATGAGATGCGCACCTTCTCCAGAGATCGGGAGAAGCTTGAGAATCTGAAACTTGGGG
AAGGTGTGAAGGGGGTGTATGTCTCCGTCGACGTGGACTGCCTTGACCCCGCATTCGCTC
CTGGTGTCTCTCATATCGAGCCGGGAGGCCTCTCGTTTCGCGACGTGCTCAACATCCTCC
AGAATCTGCAAGGTGATGTCGTCGCCGGAGATGTGGTGGAGTTCAACCCACAGCGCGACA
CGGTCGACGGGATGACGGCTATGGTCGCCGCAAAGCTGGTCCGGGAGCTGAGCGCCAAGA
TCTCAAAATGAGGAAAGCCCTGGCCAGTCAGGACATAAGCAGCAAAGAGGATTTTCAGGC
ACAATGGTCCTTGACCTTAGTTCCTGCCAATCATTTGTGCCACATTTTAGTCTGACAATC
TTCTATAAATAATAAAATCAGGCTGCAAAAACGTCTTTGAATTTGGTAAAAAAAAAAAAA
AAAA

Homology of Contig U35_16007 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g01590.1	341	protein\|arginase, putative, expressed
Brachypodium v1_2	Bradi5g02160.1	343
Arabidopsis v10	AT4G08900.1	342	arginase \| chr4:5703499-5705180 FORWARD LENGTH=342