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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_38660_PI390587928Hv_44K_v2GAAGGTGGGTGCGATGTAATGCGGATAATTGCATATTTCAAGTTCAATAAAACAATCTTT752GeneList: grey60
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.4872.7521.1290.8050.4060.761
Raw 41.83374.49328.09833.4304.28911.201



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK3657157982e-24733 - 79210060 / 60plus ABC05487
MLOCMLOC_71508.14272e-24236 - 29510060 / 60plus ABC05487
JLOC1JLOC1_47538.14138e-25234 - 29310060 / 60plus
Harvest21ABC054876843e-2529 - 8810060 / 60minusABC05487
Harvest35U35_160088413e-25753 - 81210060 / 60plus



Contig Sequence (841 bp)

>U35_16008 841 Hv_44K_v2
TCGAGCACTGTTGGCCTCTGGACACCAAGAACCAGACTCCCAAACCCCGACGACGACGAC
GACTACGACGGCCATGTCTCCCATGACAGTCCTCCTCGTCCTCGCCGTCGCCGCGACGGC
CGCGCCGCTGGCGCACGCGGCCTGCGCTGACGGCAGCGACGGCGCCATGCTGCACGGCGT
GGCGAACGACGTGCTTCTGGAGTACGGCCTCCCCAAGGGCCTCCTCCCGGACTCCGTCGT
CTCCTACACCTTCGACAACGCCACCGGTAACTTCCACATCGAGCTCGCCAGCAGCTGCTA
CGTCTGGTTCGGCGACCACTACGTCTACTTCGACAAGAACCTCAGCGGCACCATCTCCCA
CGGCGAGATCTCCAACCTCTCCGGCATCATGGCCAAGAAGTTCTTCATCTGGGTCTCCAT
CACCAGCATGGTGGCGCACCTGGAGAGGGGGATGATCGAGTTCCACGCCGGCATCATCAC
TGAGGACGTGCCGGCGTCGCTCTTCCAGAAGATCCCCGTCTGCGGCAAAGGCCTCGGCGA
GCCGCTCCGCGGCGCGGCCGGGGTGATCCGGGAGCTTGGCCTGGTCCCCGTCGCCGAGGT
GTGAGTGGCTTCGACGTCCAAAGTTCTTCAAACATGAGTTCCTTCCATGCTTTTGCTGAA
GTTTATTATACTACTCCTACATATATGATATATGGTTGGCAAAATATTTGCACCATTCTT
GGTAGAAAAGGAGAGAAGAAACCATGAGAGATGAAGGTGGGTGCGATGTAATGCGGATAA
TTGCATATTTCAAGTTCAATAAAACAATCTTTTATATCTAAAAAAAAAAAAAAAAAAAAA
A



Homology of Contig U35_16008 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g48626.21758e-55protein|expressed protein
Brachypodium v1_2Bradi1g11986.11708e-74
Arabidopsis v10None