barSeed - Barley Seed Development Database

Probe CUST_38656_PI390587928

Source Contig U35_164

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38656_PI390587928	Hv_44K_v2	TGTATTCTTGTGGATTTCTTGCTTGCGCTGTCTGCAATTCATGCCTTTCTCACCAAAAAA	1655	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.465	1.499	1.134	0.735	0.316	0.307
Raw	5575.293	8816.133	5868.480	5856.557	897.814	948.525

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_7522.1	893	5e-22	819 - 873	100	55 / 55	plus
Harvest21	ABC01521	1726	3e-25	1656 - 1715	100	60 / 60	plus	ABC01521
Harvest35	U35_164	1726	3e-25	1656 - 1715	100	60 / 60	plus

Contig Sequence (1726 bp)

>U35_164 1726 Hv_44K_v2
GGGAAGAGGGCGCCGGCCACCCCCGCCACCGGCAGGCCGTCCAGGGAGCGCAAGACGGTC
GAGCGCTACTCCGAGCTCACCCCGAGCTCCACCCCCGCCAAGAAGTCCGCCTCCATTCTC
CAGGGCTCTGGGACCAAGCTCAAGGACATCCCCAACGTTTTTTTCAAACTAACCAAGAGA
AAGGCGGATGACAATCTGCAGAGTCTTCATTCTTTATTGTATGGGAGAAAATCAACTGCC
CATTTCTTGAAAAGAAACTTATCCCAGTTTTCTGGTTATGTTTGGACTGACAATCCGGAA
AAGCAAAGGAGCAAGATAAAAGATAAGCTTGACAAGATGAACAAGGAGAAGTTGCTAGAT
TTTTGTGATATACTCGATGTTCAGGCCAAAAGTACTGCAAAGAAGGAGGAAGTTTCTGCC
AAATTGCTTGAGTTTCTGGAGTCTCCTTGCATTACCAGAGCTGTTGTTATCAGTGCTGTG
AAGAAAGGGAAGAAGCGCCGCATGAAGTCTAAAGGAACTAGCAAGGCAACAGCTGAAGGT
GGAGAGAAGAAAAAGAGGAAGAGTCAGAAACAAGCAGTTGAGGCTGAAAAAGAGGATGAT
GATGAAGATGGTGCTGGTCCTGCTGATTCCGAGGACTTGTCAATGGGAGGAAGTGATGAG
GATGCTGAAGTGAAAGAAGATGCCAAGAGTGATGAAGAGCCTGAAGCGACACCAGTTAAG
AAAAAGTCAAAAGATGATAAACAAGGGAATAAGGAAGCTGGATCCAAGGCAAAGGAAAAG
GATGCATCGGTAAAGAAGACTCCTACTAAATCTGTAAAAAGTGTGTCAAAGCCAGATGTG
GAGTTGGAGAACAAAAAGGCTGTCAAGAGAACACCAAAGAATTCAACAAAGCAAAGCAAA
ACACCTGTGGACAAGGCCAAGAAGAAGGTTGCAAAACCTAAAAAGGATGATGGAAAAGAG
AGCCAAAACAACAGCAAGGCACGCAAGAAGCCAGGTCCCAAGGCAACCGGTGAAAATAAA
GGAAAAGGCAAGGTGGCCCCAACCACTAAACAGTTGCATGCTGTTGTTAGTAACATATTG
AAAGAAGTGGACTTCAATACGGCAACTCTGGCTGACATTCTCAAGAAATTAGGAGACCAC
TTTGACATGGACCTCATGGATAGGAAGTCGGAGGTGAAGCGCATCATAGAGGAAGTGATC
AACAGCATGTCCGATGATGAAGGCGAGGAAGAAAACGAGGAAGAGGATGCAGAAGAGAAT
GGCAAGAAGGAAGAAGACTCAAAGGAGGATCCTGATGAAGAGAAGGATGAGAAATAAGCT
GAGCTGGCCTGACGAGATGTGATATCCTGTATTTGTCGAGTGTTCTTCTTGGTTGCTGGC
GCTGTTTTTCGCCTGTACAATGATGGCACCGCAACAACCATTTTGGTGGCCTGGGCAGTG
CTAGAATGTTTGTTAACCATTTGGTGGCCCTGCATGCCTGGTTGTTGTGCTTGACTCGGT
GTTATTGACCTGTAGTCTCTTAGTTGCTGGTCATGTACAATAGCTGTTTGGTCATATGAC
TATGTTTCTTTCTTAGGTAGCTAGCCCTGACTGTAATTTGCAGCATGCATACTTATCCTT
GTTCTGTTCCTTGCATTTTATCCATGTAAAACAGTTGTATTCTTGTGGATTTCTTGCTTG
CGCTGTCTGCAATTCATGCCTTTCTCACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_164 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g70020.1	510	6e-132	protein\|DEK C terminal domain containing protein, expressed
Brachypodium v1_2	Bradi2g59267.1	514	8e-145
Arabidopsis v10	AT3G48710.1	462	3e-76	DEK domain-containing chromatin associated protein \| chr3:18041024-18043995 FORWARD LENGTH=462