- Probe CUST_38642_PI390587928
- Source Contig U35_16012
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38642_PI390587928 | Hv_44K_v2 | CCTCGTTAAGTTTTAGATAAGTTGTACGAATGTTGATGGATGCTTCGAGTTTAAGTTTTC | 552 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.037 | 1.188 | 1.250 | 1.065 | 0.455 | 0.409 |
| Raw | 478.205 | 853.715 | 782.879 | 1034.825 | 156.882 | 155.391 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK249822.1 | 707 | 3e-22 | 547 - 605 | 98 | 58 / 59 | plus | ABC08233 ABC29276 ABC40874 |
| JLOC1 | JLOC1_20363.1 | 207 | 1e-22 | 106 - 164 | 98 | 58 / 59 | minus | |
| Harvest21 | ABC38379 | 498 | 3e-25 | 125 - 184 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC08233 | 625 | 3e-25 | 440 - 499 | 100 | 60 / 60 | plus | ABC08233 |
| Harvest21 | ABC08231 | 736 | 3e-25 | 553 - 612 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC40874 | 594 | 5e-23 | 119 - 177 | 98 | 58 / 59 | minus | ABC40874 |
| Harvest21 | ABC34099 | 483 | 5e-23 | 295 - 353 | 98 | 58 / 59 | plus | |
| Harvest21 | ABC08235 | 693 | 5e-23 | 527 - 585 | 98 | 58 / 59 | plus | |
| Harvest35 | U35_42613 | 498 | 3e-25 | 125 - 184 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_16012 | 736 | 3e-25 | 553 - 612 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16011 | 654 | 3e-25 | 469 - 528 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_43794 | 594 | 5e-23 | 119 - 177 | 98 | 58 / 59 | minus | |
| Harvest35 | U35_16016 | 715 | 5e-23 | 527 - 585 | 98 | 58 / 59 | plus | |
| Harvest35 | U35_16014 | 1827 | 5e-23 | 1660 - 1718 | 98 | 58 / 59 | plus |
Contig Sequence (736 bp)
>U35_16012 736 Hv_44K_v2 GATCGATCTACACCCCGGAGCATCGCCGCACACCCTCCCCTTTATCCACTGTCCTGGAAC GCCGCCCCACACCAGATCCGTGCGACCCTCCATCCCGGCGCGCCGCCCCTCGGCAACACT CCCCTGCAACCCTGCTTCTGTGGCGCGCCGTTCCTCGTCACTGCTCCCCTACGGCCAACT GCGTCTACTACCTCTACACGGGGTCCTGCGGCTATGGGGAGAGTTGCCGCTACAACCACC CTCGCGATCAAGTTGTCGTGGTTGAATTANAGCTAGTTGGTGCGAAGGGGAGATTCCAGT TGAAGCCTCTTGTTGTGACTGAATTGATTCAGGTATGTAGCATGCAAGCAGAGCAAAGGA TGAACTTAACAATTACCAAATCTACCTCATTTGATTTGATAAGATTCAAAAGATAAATGG ATGATTATATGGGTGCATGGCAACTATACAACAATTATGAAGACGATGTTCCTGTTCATG ATAATGATGATGATGATGGAGGCTTTCAGTTTTAATTAAGTTGTAGGGATGGAGTTCTTG CTAGATGATGTTCCTCGTTAAGTTTTAGATAAGTTGTACGAATGTTGATGGATGCTTCGA GTTTAAGTTTTCTTGTGAAGAAAATATTTAGATTGCACATCACATTTGGATGATGTTCCT CATGTAATATCATTACTGTAATCCAACAATTTTATCTAATATATGATTTCTTCCAAANNA AAAAAAAAAAAAAAAA
Homology of Contig U35_16012 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |