barSeed - Barley Seed Development Database

Probe CUST_38639_PI390587928

Source Contig U35_16014

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38639_PI390587928	Hv_44K_v2	TTGCCTTCCCATCTACTAGTATGACGTGTAATGTTGCGGGTGGCAATAAGAATGCCCTTA	1241	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.290	0.454	0.645	1.670	1.819	3.668
Raw	218.167	547.826	671.407	2798.456	1028.358	2299.623

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250711.1	1373	2e-24	1173 - 1232	100	60 / 60	plus	ABC06182
MLOC	AK249053.1	2586	2e-24	2456 - 2515	100	60 / 60	plus	ABC06182
MLOC	MLOC_188.1	1140	2e-24	212 - 271	100	60 / 60	minus	ABC06182
MLOC	MLOC_188.2	1731	2e-24	212 - 271	100	60 / 60	minus	ABC06182
MLOC	MLOC_188.4	864	2e-24	62 - 121	100	60 / 60	minus	ABC06182
MLOC	MLOC_188.3	1554	2e-24	115 - 174	100	60 / 60	minus	ABC06182
MLOC	MLOC_188.5	1494	2e-24	62 - 121	100	60 / 60	minus	ABC06182
JLOC1	JLOC1_127.2	1896	8e-25	1364 - 1423	100	60 / 60	plus
JLOC1	JLOC1_127.1	1881	8e-25	1349 - 1408	100	60 / 60	plus
Harvest21	ABC06182	1475	3e-25	1174 - 1233	100	60 / 60	plus	ABC06182
Harvest35	U35_16014	1827	3e-25	1242 - 1301	100	60 / 60	plus

Contig Sequence (1827 bp)

>U35_16014 1827 Hv_44K_v2
ATCCACCAATCTCCAGCCTCCGCCCTATAAATCGCCCCGCCGGCGCCAATTCGGCGACCC
ACCGAGCCAGCCACCTCTGACCCTGGGCGCATCCAAACAAAGGAGGGAGTCGCGCCCAGT
CTACGCTAGCGGCCGATCACATCACCAGCTGCAGGCAGGGGATTAATTAAGCGGTGGGGG
CGGGGAAAGCGCGGCGGCGGCATGGAGAGCTCGACATCGAGGACGAGACTGAATTGCATC
AGCCTGGCGGACCCCGACACCCAGAGATCGGTCGCGCTCCTCAAGCAGGCATGCTTGGAT
TCAGGCTTCTTCTATGTGCTGGATCATGGGATAAGCCAGGAATTCATGGATGAGGTTTTT
GCCGAAAGCAAGAAGTTCTTTGAACTTCCGAACAGTGAGAAAATGAAGCTTCTCCGAAAT
GAGAAGAATCGAGGGTATACACCTATGCTAGATGAGATTCTTGATCCAGAAAACCAAGTG
AATGGTGACTACAAGGAAGGGTATTATATTGGTGTTGAGGTACCTACAGATGACCCACAA
TCAAATAGGCCATTTTATGGTCCAAACCAGTGGCCTTCTGAAGAAGTATTGCCCAAATGG
AGGGAGGTGATGGAGCAATATCACAGGGAAGCATTGAGAGTGGCCAAATCAGTTGCAAGG
ATCATTGCTCTTGCTTTGAACCTAGATGCAGATTTCTTTGATAGACCTGAAATGCTTGGC
GATTCCATAGCCACATTAAGGCTCCTGCACTATGAAGGTGGACAAAAAACAGGTCAAGTG
TCAAATCCTTCTAAGGGAGTTTATGGAGCCGGTGCACATTCGGATTATGGCCTGATCACT
CTCTTAGCAACTGATGATGTAGTTGGTCTCCAAATATGCAAGGACAGGAATGCTCAGCCT
CAAGTATGGGAATATGTAGCTCCTGTTAAAGGCGGCTTTATTGTCAATCTTGGTGATATG
CTCGAACGCTGGAGTAACTCCCTTTTCAGGTCAACTTTACATCGAGTGGTCCTGGATGGA
CGAGAGCGCTATTCCATTGCCTTTTTCGTGGAGCCAAGCCACGACTGCGTAGTCGAGTGC
CTGCCAACCTGCAAATCTGAGACGAATCCTCCAAAGTTCCCCCCAATCACTTGCTCGGCG
TACCTATCCCAGCGCTACAAGGACACGCATGCAGATCTGAGCACTTACGGCAACGGCAAA
GCCTGAAAGAAGCAGCTCTATTTTTTGCCCTGTTCACTTTCTTGCCTTCCCATCTACTAG
TATGACGTGTAATGTTGCGGGTGGCAATAAGAATGCCCTTAGGACGGAGGATGGCAATGT
TGTACTACTAATGTGCTAATATCAGTGTAACCATAGCTGTGGAGAAGTCATCATCGTTCA
TGTGGACATGAACAATGGTTGCCTTCTTTCTGAATGTGTACAAGTTCCGAAGTTTATCGC
TCAAAAAAAAAAAAAAAATGATGAACTTAACAATTACCAAATCTACCTCATTTGATCTGA
TAAGATTCAAAAGATAAATGGATGATTATATGGGTGCATGGAAACTATACAACAATGATG
AAGACGATGTTCCTGTTCATGATGATGATGATGATGATGATGATGGAGGCTTTTAGTTTT
AATTAAGTTGTAGGGATGGAGTTCTTGCTAGACGATGTTCCTCGTTAAGTTTTAGATAAG
TTGTACAAATGTTGATGGATGCTTCGAGTTTAAGTTTTGTTGTGAAGAAAATATTTAGAT
TGCACATCACATTTGGATGAAGTTCCTCATGTAATATCATTACTCTAATCCAACAATTTT
ATCTAATATATGATTTCTTCCTCTCTT

Homology of Contig U35_16014 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g09300.2	335	0.0	protein\|oxidoreductase, putative, expressed
Brachypodium v1_2	Bradi2g05600.1	335	0.0
Arabidopsis v10	AT1G35190.1	329	1e-167	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr1:12890544-12892632 FORWARD LENGTH=329