barSeed - Barley Seed Development Database

Probe CUST_38635_PI390587928

Source Contig U35_16016

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38635_PI390587928	Hv_44K_v2	GATGATGTTCCTCGTTAAGTTTTAGATAAGTTGTACAAATGTTGATGGATGCTTCGAGTT	517	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249822.1	707	2e-24	538 - 597	100	60 / 60	plus	ABC08233 ABC29276 ABC40874
JLOC1	JLOC1_20363.1	207	8e-25	114 - 173	100	60 / 60	minus
Harvest21	ABC40874	594	3e-25	127 - 186	100	60 / 60	minus	ABC40874
Harvest21	ABC34099	483	3e-25	286 - 345	100	60 / 60	plus
Harvest21	ABC08235	693	3e-25	518 - 577	100	60 / 60	plus
Harvest21	ABC38379	498	1e-23	134 - 193	98	59 / 60	minus
Harvest21	ABC08233	625	1e-23	431 - 490	98	59 / 60	plus	ABC08233
Harvest21	ABC08231	736	1e-23	544 - 603	98	59 / 60	plus
Harvest35	U35_43794	594	3e-25	127 - 186	100	60 / 60	minus
Harvest35	U35_16016	715	3e-25	518 - 577	100	60 / 60	plus
Harvest35	U35_42613	498	1e-23	134 - 193	98	59 / 60	minus
Harvest35	U35_16014	1827	1e-23	1654 - 1710	100	57 / 57	plus
Harvest35	U35_16012	736	1e-23	544 - 603	98	59 / 60	plus
Harvest35	U35_16011	654	1e-23	460 - 519	98	59 / 60	plus

Contig Sequence (715 bp)

>U35_16016 715 Hv_44K_v2
GCTCCCACGTCGGCCGCCGGCCGCCGGCCGCCGCCCCTCGATCGATCTACACCCCGGAGC
GTCGCCGCACACCCTCCCCTATTATCCACTGTCCTGGAACGCCGCCCCACACCAGATCCG
TGCGACCCTCCATCCCGGCGCGCCGCCCCTCGGCAACACTCCCCTGCAACCCTGCTTCTG
TGGTGCGCCGTTCCTCGTCACTGCTCCCCTGCGGCCAACTGCGTCTGCTACCTCTACACG
GGGTCCTGCGGCTATGGGGAGAGTTGCCGCTACAACCACCCTCGCGGTCAAGCTGTCGTG
GTATGTGGCATGCAAGCAGAGCAAATGATGAACTTAACAATTACCAAATCTACCTCATTT
GATCTGATAAGATTCAAAAGATAAATGGATGATTATATGGGTGCATGGAAACTATACAAC
AATGATGAAGACGATGTTCCTGTTCATGATGATGATGATGATGATGATGATGGAGGCTTT
TAGTTTTAATTAAGTTGTAGGGATGGAGTTCTTGCTAGATGATGTTCCTCGTTAAGTTTT
AGATAAGTTGTACAAATGTTGATGGATGCTTCGAGTTTAAGTTTTGTTGTGAAGAAAATA
TTTAGATTGCACATCACATTTGGATGATGTTCCTCATGTAATATCATTACTCTAATCCAA
CAATTTTATCTAATATATGATTTCTTCCTCTCTTGAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16016 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None