barSeed - Barley Seed Development Database

Probe CUST_38630_PI390587928

Source Contig U35_16018

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38630_PI390587928	Hv_44K_v2	AATTGGTGAAGCTGAAGACAGATGTATCCTATGTATGATGGGTGTAATGGATGGTAGAGG	1460	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.049	1.558	1.786	1.149	0.394	0.309
Raw	2354.247	5381.743	5313.303	5373.113	664.086	553.604

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370886	3249	2e-24	3105 - 3164	100	60 / 60	plus	ABC05724
MLOC	MLOC_55337.4	639	2e-24	503 - 562	100	60 / 60	plus	ABC05724
MLOC	MLOC_55338.1	5847	2e-24	1683 - 1742	100	60 / 60	plus	ABC05724 ABC14452
MLOC	MLOC_55337.2	6168	2e-24	1988 - 2047	100	60 / 60	plus	ABC05724 ABC14452
MLOC	MLOC_55337.3	2655	2e-24	1894 - 1953	100	60 / 60	plus	ABC05724
MLOC	MLOC_55337.1	2088	2e-24	1932 - 1991	100	60 / 60	plus	ABC05724
JLOC1	JLOC1_35679.4	5964	8e-25	4012 - 4071	100	60 / 60	minus
JLOC1	JLOC1_35679.3	5127	8e-25	3175 - 3234	100	60 / 60	minus
JLOC1	JLOC1_35679.2	3669	8e-25	1717 - 1776	100	60 / 60	minus
JLOC1	JLOC1_35679.1	4618	8e-25	2666 - 2725	100	60 / 60	minus
JLOC1	JLOC1_35678.1	2909	8e-25	1538 - 1597	100	60 / 60	plus
Harvest21	ABC05724	1567	3e-25	1404 - 1463	100	60 / 60	plus	ABC05724
Harvest35	U35_16018	1624	3e-25	1461 - 1520	100	60 / 60	plus

Contig Sequence (1624 bp)

>U35_16018 1624 Hv_44K_v2
TCGAGCACTGTTGGCCTACTAACCCCGAGCCACTACCACACGCGACCAAGAAGCGAACGC
ACACCATGCCGCCCACCCCCACCACCCCCGCGGCTACCGGCGCCGCCGCCGCGGTGACGC
CGGAGCACGCGCGACCGCACCGAATGGTCCGCTTCAACCCGCGCAGCGACCGCTTCCACA
CGCTCTCCTTCCACCACGTCGAGTTCTGGTGCGCGGACGCCGCCTCCGCCGCCGGCCGCT
TCGCGTTCGCGCTCGGCGCGCCGCTCGCCGCCAGGTCCGACCTCTCCACGGGGAACTCCG
CGCACGCCTCCCAGCTGCTCCGCTCGGGCTCCCTCGCCTTCCTCTTCACCGCGCCCTACG
CCAACGGCTGCGACGCCGCCACCGCCTCCCTGCCCTCCTTCTCCGCCGACGCCGCGCGCC
GGTTCTCCGCCGACCACGGGATCGCGGTGCGCTCCGTAGCGCTGCGCGTCGCAGACGCCG
CCGAGGCCTTCCGCGCCAGCGTCGACGGGGGCGCGCGCCCGGCCTTCGCCCCCGTGGACC
TCGGCCGCGGCTTCGGCTTCGCGGAGGTCGAGCTCTACGGCGACGTCGTGCTCCGCTTCG
TCAGCCACCCGGACGGCACGGACGTGCCCTTCTTGCCGGGGTTCGAGGGCGTGACCAACC
CGGACGCCGTGGACTACGGCCTGACGCGGTTCGACCACGTCGTCGGCAACGTCCCGGAGC
TTGCCCCCGCCGCAGCCTACATCGCCGGGTTCACGGGGTTCCACGAGTTCGCCGAGTTCA
CGGCGGAGGACGTGGGCACGACCGAGAGCGGGCTCAACTCGGTGGTGCTCGCCAACAACT
CGGAGGGCGTGCTGCTGCCGCTCAACGAGCCGGTGCACGGCACCAAGCGCCGGAGCCAGA
TACAGACGTTCCTGGAACACCACGGCGGCCCGGGCGTGCAGCACATCGCGGTGGCCAGCA
GTGACGTGCTCAGGACGCTCAGGAAGATGCGTGCGCGCTCCGCCATGGGCGGCTTCGACT
TCCTGCCACCCCCGCTGCCGAAGTACTACGAAGGCGTGCGACGCCTTGCCGGGGATGTCC
TCTCGGAGGCGCAGATCAAGGAATGCCAGGAGCTGGGTGTGCTCGTCGATAGGGACGACC
AAGGGGTGTTGCTCCAAATCTTCACCAAGCCAGTAGGGGACAGGCCGACCTTGTTCCTGG
AGATGATCCAGAGGATCGGGTGCATGGAGAAGGACGAGAGAGGGGAAGAGTACCAGAAGG
GTGGCTGCGGCGGGTTCGGCAAAGGCAACTTCTCCGAGCTGTTCAAGTCCATTGAAGATT
ACGAGAAGTCCCTTGAAGCCAAGCAATCTGCTGCAGTTCAGGGATCATAGGATAGAAGCT
GGTCCTTGTATCATGGTCTCATGGAGCAAAAGAAAACAATGTTGTTTGTAATATGCGTCG
CACAATTATATCAATGTTATAATTGGTGAAGCTGAAGACAGATGTATCCTATGTATGATG
GGTGTAATGGATGGTAGAGGGGCTCACACATGAAGAAAATGTAGCGTTGACATTGTTGTA
CAATCTTGCTTGCAAGTAAAATAAAGAACAGATTTTGAGTTCTGCAAAAAAAAAAAAAAA
AAAA

Homology of Contig U35_16018 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g07160.1	447	0.0	protein\|glyoxalase family protein, putative, expressed
Brachypodium v1_2	Bradi3g05060.1	437	0.0
Arabidopsis v10	AT1G06570.1	473	3e-157	\| Symbols: PDS1, HPD \| phytoene desaturation 1 \| chr1:2012015-2013543 REVERSE LENGTH=473