barSeed - Barley Seed Development Database

Probe CUST_38627_PI390587928

Source Contig U35_174

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38627_PI390587928	Hv_44K_v2	CGACGATGGTATCCCTGATTTTTAGAAGCGGAACTTGTTATCAGATCAATTAAATTCATT	985	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.786	1.485	1.876	1.254	0.728	0.782
Raw	133.445	395.500	435.577	453.243	93.097	110.734

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376072	2459	2e-24	2319 - 2378	100	60 / 60	plus	ABC15745
MLOC	MLOC_73542.2	2567	2e-24	2176 - 2235	100	60 / 60	plus	ABC15745
MLOC	MLOC_73542.3	1747	2e-24	1577 - 1636	100	60 / 60	plus	ABC15745
MLOC	MLOC_73542.1	2125	2e-24	1955 - 2014	100	60 / 60	plus	ABC15745
JLOC1	JLOC1_48964.1	2174	8e-25	1942 - 2001	100	60 / 60	plus
Harvest21	ABC15745	1098	2e-22	985 - 1042	98	58 / 59	plus	ABC15745
Harvest35	U35_174	1096	3e-25	986 - 1045	100	60 / 60	plus

Contig Sequence (1096 bp)

>U35_174 1096 Hv_44K_v2
GGCTGCAAGAAGCTCCAGGTTCTCCGCGTGCTCCCATTGGACGCGCACGAGGACGCAGAC
GAGCTGGTGTCGGAGGTCGGGCTCACCGCCATCTCGGAGGGCTGCCGGGACCTTCGCTCC
ATCCTCTACTTCTGCCAGAGGATGACCAACGTCGCCGTGGTCACCATGTCCCAGAACTGC
CCCGAGCTCAAGGTGTTCCGGCTGTGCATAATGGGGAGGCACCGGCCGGACCACGTGACG
GGGGAGCCGATGGACGAGGGGTTCGGCGCCATCGTACGCAACTGCAGCAGGCTCACCAGG
CTCTCGACGTCAGGGCACCTGACCGATCGAGCGTTCGAGTACATCGGCAAGTACGGCAGC
TCCCTGCGGACGCTCTCGGTGGCGTTCGCCGGAGACAGCGATCTGGCGCTGCAGCACATC
CTCCAGGGCTGCTCCAAGCTGGAGAAGCTCGAGATAAGGGATTGCCCGTTCGGCGACGCC
GGCCTGCTCTCCGGCATGCACCATTTCTACAACATGCGGTTCGTCTGGATGTCCGGCTGC
AGCCTGACGCTGGAAGGCTGCAAGGCGGTGGCGCGGCAGCTCCCGCGGATGGTGGTGGAG
CTGATAAACAGCCAGCCGGAGAACGAGAAGACGGACGGCGTCGACATCCTATACATGTAC
CGGTCGCTGGAGGGGCCAAGGGAGGACGTTCCACCATTCGTGAGGATCCTGTAAGCTTCA
TCGCCGCCGAGGTGCTTGACATCCATGGGGGCTGATCATATGCCATCCTCTGTAGACGCC
GGAGCTGCATCGGCGGCATCGAAGGATCAGCAGAGTGTTCGTTCAGTAGTTGTTGTTGTC
GTAGCAGTAGTAGGGTTCATTGGCATTTCCACATTTTCTACGAGAAGATCATAAAGTGCG
GCCGGAGCATGCTTCTTCGAGGGGGCTTCATCGCCGCGGCTTCCTCAGTTTTGCTTGCTG
CTCCGGGAGCCGCCTGCCGGCACGGCGACGATGGTATCCCTGATTTTTAGAAGCGGAACT
TGTTATCAGATCAATTAAATTCATTAACACTTCCCAAAAAAAAAAAAAAAAACNCGAGGA
AGGGNCGCGGTACCCA

Homology of Contig U35_174 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08850.1	604	2e-147	protein\|AUXIN SIGNALING F-BOX 2, putative, expressed
Brachypodium v1_2	Bradi1g72070.1	604	1e-154
Arabidopsis v10	AT5G49980.1	619	4e-112	\| Symbols: AFB5 \| auxin F-box protein 5 \| chr5:20334420-20336531 REVERSE LENGTH=619