barSeed - Barley Seed Development Database

Probe CUST_38626_PI390587928

Source Contig U35_175

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38626_PI390587928	Hv_44K_v2	GAATGAATTGGTGGTGATTTGCATCAAATAATGTTAGATCATTTTTAGCCCCTCGTCCTG	2077	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62137.1	2288	2e-24	3 - 62	100	60 / 60	minus	ABC04777 ABC04779
JLOC1	JLOC1_40643.2	2358	8e-25	2194 - 2253	100	60 / 60	plus
JLOC1	JLOC1_40643.1	2326	8e-25	2162 - 2221	100	60 / 60	plus
Harvest21	ABC04777	2158	3e-25	2078 - 2137	100	60 / 60	plus	ABC04777
Harvest35	U35_175	2158	3e-25	2078 - 2137	100	60 / 60	plus

Contig Sequence (2158 bp)

>U35_175 2158 Hv_44K_v2
CTCTCCTGCTTCCTCCTTCCACCAGTCCACATTCACACACGCTCTCCCTCCCCCACCTCC
GTTCCACGGCTCGCGTTCCTTCGCTGGCAGGCTAGCAGATCTCCGATGGGGTGCTTCCAG
TCCAAGCCGGCGGGGAAGCCGCTGCCGCCCGACGCCGACGCCGCCCTCCCGCCCGACGAC
CCCGCAGATCCCGAGGCGGCGAACGGAGCGGACGGGGCGGGCGCGGACGGCGACGAGAAG
GACGGGGCGAAGCGGGCGGTGCCGGTGTTCAAGGAGTTCGGGCTCGCCGAGCTGCGGGCC
GCCACCAAGGGCTTCAGCGCCGACCTCATCGTCTCCGAGAGCGGCGAGAAAGCGCCCAAC
GTCGTCTACCGGGGCCGCCTCGACGGCGGTCGCCTCATCGCCGTCAAGCGCTTCTCCCGC
CTCTCCTGGCCCGACCCGCAGCAGTTCCTCGCGGAAGCGGCCGGCGTGGGGAAGGTGCGG
CACAAGCGACTGGTCAACCTCATTGGCTGCTGCGCCGAGGGTGACGAGAGGCTGCTCGTC
GCGGAGTACATGCCCAACGACACATTGTCCAAGCACCTCTTCCACTGGGATAAGCAGCCG
TTGCCATGGGAAATGCGATTGAGGGTTGCACATTACATTGCGCAAGCTCTCGATCATTGC
AATGCAGAGAACAGGAAAATCTATCATGACTTGAATGCCTACAGAGTACTTTTTGATGAG
GAAGGTGATCCTCGCTTGTCAAGTTTCGGACTAATGAAGAACAGCCGTGACGGCAAAAGT
TATAGCACCAACCTGGCTTACACCCCTCCAGAGTTTCTACGAACGGGCAGAGTCATCGCT
GAGAGTGTGATATATAGCTACGGAACAGTTCTGTTGGATCTTTTGAGTGGGAAACACATT
CCTCCCAGTCATGCACTTGATTTGATAAGGGGAAAGAACATACTGCTATTGATGGATTCC
TCCTTAGAAGGACAATATGCTAATGAAGATGCTTCAAAATTAGTTGACCTTGCATCAAAA
TGCTTGCAGTTTGAAGCAAGGGACAGACCCAATATAAAGTATTTATTGTCTTCTGTTGGG
CCTCTTCAGAAGCAAAAGGAGGTGGCGTCACATGTGTTGATGGGCATTACAAAAACTGCG
TCGGTCTTACCAACTATTCTTTCTCCACTTGGAAAGGCCTGTGCCGGAATGGACCTTACA
GCAGTACATGATATATTGCTGAAAACAGGTTACAAAGATGATGAAGGTGCAGAAAATGAG
TTGTCCTTTCAAGAATGGACTCAGCAAGTGCAAGAGATGCTGAACACAAAGAAGTTTGGT
GATATTGCATTTCGAGATAAAGATTTCAAGACTGCAATTGACTACTATTCAAAGCTAGTT
GGAATGATGTCAGTGCCTTCAGCTACAGTTTTTGCCAGGCGGAGTTTTTCCTACCTGATG
AACGGACAGTCGGAGCTTGCTCTACGCGACGCAATGCAGGCCCAGGTCTGCATGCCTGAA
TGGCCTACCGCATTCTACCTCCAAGCCCTAGCTCTCTCAAAGCTCGGAATGGAAACCGAT
GCACAGGACATGCTCAATGACGGAGCCACCTTTGAGGCCAAGAAGCAAAACAGCTGGCGT
GGTTAGGGACGAAGCCACTGCTTCCCCCAAACTGTTGTTGCCTTTCAACAGAAAAGGGTA
CAATGATGAGTGTTCACTGGGACGTCTGATGAGCTGCTAGGAGTGGGATTGAAGTGCACT
GTTTTATCGTGCGAATTCGCGACCCCTGCCCCCAAATGTCGATTAATGATGCTGTCGTGA
CCTGGAAGATCTAAAAGAGCAGAAGGCTTATGAGTTGCACCACATGACGGCAAGATTTCG
CCGATCATTGCGTGGCGGTGCTCCCTTGGGATAGAAGATTGTAATTATGGTGACGCTCTC
TTAACGATTTCTCCTTTTTTGTTTCTGCTGGATGGCTGGACGATTGTGTGGGAACAAAGG
GGGTTGGTTCCTTGTGATTAGCTGAGGAGAAAATAAACCAGAGCCATCTGAATTCCGTTT
GATTCCAGGGTGTTTCCTCATCTGTTGCTTTTCTGTTGAATGAATTGGTGGTGATTTGCA
TCAAATAATGTTAGATCATTTTTAGCCCCTCGTCCTGTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_175 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g42110.1	513	protein\|protein kinase family protein, putative, expressed
Brachypodium v1_2	Bradi3g33950.1	513
Arabidopsis v10	AT5G46570.1	489	\| Symbols: BSK2 \| BR-signaling kinase 2 \| chr5:18894687-18897198 FORWARD LENGTH=489