barSeed - Barley Seed Development Database

Probe CUST_38620_PI390587928

Source Contig U35_30311

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38620_PI390587928	Hv_44K_v2	TCTTGATTCGTCTCCATTCGTCCGTGCTCGTGCAGTTCCATCAGTACCAGGTGGTGGGTC	136	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.585	0.615	1.203	1.368	0.977	1.360
Raw	82.305	135.578	230.515	396.239	105.417	159.941

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC30170	532	3e-25	137 - 196	100	60 / 60	plus
Harvest35	U35_30311	532	3e-25	137 - 196	100	60 / 60	plus

Contig Sequence (532 bp)

>U35_30311 532 Hv_44K_v2
CCTCCTGCCCTCATCTCCTTAGGTTAGGTTAGGCTAGGGGCTTCGCAGAGCACGCGGAAA
TGGTGGCCTTCCGGGTAAGTTCAGCCCCCCGGCCGTTGCTATCCTCGACGCCTCCGTGTC
CGCGCTTGATCCGTGTTCTTGATTCGTCTCCATTCGTCCGTGCTCGTGCAGTTCCATCAG
TACCAGGTGGTGGGTCGCGCGCTGCCGACGCCCGGCGATGAGCAGCCGAAGATCTACCGC
ATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGGTATTTCCTGAGG
AAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAGATCTTTGAG
AAGAACCCAACCACCATCAAGAACTATGGCATTTGGCTGCGTTACCAGAGCAGGACTGGG
TACCACAACATGTACAAGGAATACCGTGACACCACACTGAATGGTGCCGTGGAGCAGATG
TACACTGAGATGGCCTCTCGCCACCGTGTGAGATCCCCCTGCATTCAGATCA

Homology of Contig U35_30311 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49030.1	179	1e-83	protein\|60S ribosomal protein L18a, putative, expressed
Brachypodium v1_2	Bradi2g16430.1	179	8e-86
Arabidopsis v10	AT2G34480.1	178	2e-80	Ribosomal protein L18ae/LX family protein \| chr2:14532916-14534161 REVERSE LENGTH=178