barSeed - Barley Seed Development Database

Probe CUST_38613_PI390587928

Source Contig U35_16022

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38613_PI390587928	Hv_44K_v2	GTATGAATGGAACCAATAACGGAGAATAGGCTGTGAAGTCAAATCGGCAGGATTATCTTG	2352	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.314	1.410	1.305	0.904	0.357	0.306
Raw	1283.259	2162.686	1730.040	1849.001	263.720	243.349

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_15683.1	1973	4e-23	1906 - 1965	98	59 / 60	plus
Harvest35	U35_16022	2412	3e-25	2353 - 2412	100	60 / 60	plus

Contig Sequence (2412 bp)

>U35_16022 2412 Hv_44K_v2
GCTCGACCGCCTTCCTCCCCGATCTCGCCTCTCCTCGTCTGGCGACCAGATCCGCTTCTC
CGATAACCAGATCCGGCGGAGCACGCCCCGCTCGCCCCGCCCAAGTCGCAGTCGCGAGTT
AAGTAAGGGAGGCAGCAGCGGCAGCTGCAGCCATGGCGGCGGCGGAGGAGAACAGCTCGC
TCTTCCTGATATTCATCCTGACCATGATCGCGCTGCCCCTGGTGCCCTACACGATCACGC
GGCTGTGCCACGCGGCGACGAAGAAGGCCAAGACCATCCACTGCCGCTGCTCCGGGTGCC
ATCGCTCCGGAAAGTACCGGAAGTCGATCTACAAGAAGATATCCAACTTCTCGACGTGGA
GCAACCTTACCATTTTGCTTCTCTGGATCGTTGTGATCTTCCTGGTTTACTACATCAAAC
TCAGCAGCCGCGAGGTCCAAGTATTTGAGCCATACAGCATTCTTGGACTTGAACCAGGGG
CATCAGAATCTGAAATCAAGAAATCATACAGGAGACTCTCCATTCAGTACCATCCTGATA
AAAATCCCGATCCTGAGGCCCATACGTACTTTGTTGAATCTATCTCCAAGGCATATCAGG
CTTTAACTGATCCTACATCTCGTGAAAATTATGAGAAGTATGGCCATCCAGATGGGCGCC
AGGGGTTCCAAATGGGCATCGCTTTGCCCAAGTTCTTGTTGAATATGGATGGTGCATCTG
GCGGGATAATGCTTCTAGGAATAGTGGGGCTTTGCATACTCTTCCCCTTAATGATAGCAG
TTATTTATTTATCAAGGTCATCGAAGTATACTGGAAATTATGTCATGCATCAAACTCTGT
CCACTTACTATTACTTTATGAAGCCATCTCTAGCTCCAAGCAAAGTCATGGATGTCTTCA
TCAAGGCTGCAGAGTATATGGAGATGCCAGTACGACGCAGTGATGACGAGCCCCTACAAA
AATTGTTTGTGGCAGTTAGAAGTGAGTTAAATCTAGATTTAAAGAATATTAGAACAGAGC
AAGCCAAGTTCTGGAAGCAGCATCCATCACTTGTAAAGATGGAACTCTTGATTCAGGCTC
ATCTTACTCGAGAGTCATTTGCTTTGACACCAGCTCTAGTAAAAGATTACAGGCACATGC
TTGAACTTGCGCCTCGTCTTTTGGAAGAACTAGTTAAGATTGCACTTCTACCGAGGAGTC
CCAACGGTTTTGGATGGCTCAGGCCTGCAATCGGTGTAGTTGAGCTGTCTCAAAGTATCA
TTCAGGCTGTCCCTCTCAGTGCTCGAAAAGCTGGTGGAGGTAATTCAGAAGGAATAGCAC
CTTTCTTGCAGCTGCCACATTTTACTGAAGCGACTGTCAAAAAAATTGCCCGCAAGAAAA
TCCGTGCATTCCAAGAACTTTGTGATATGTCGGAGGTGGAACGTGCCACATTGCTGACAC
AGGTAGCTGGCCTTTCAGAAGAAGAAGCTCGGGATGTAGAGCTTGTACTGGAGATGATTC
CTACGATTGAGGTGGATATTAAATGTGAAACTGAAGGAGAAGAGGGCATACAAGAGGGTG
ATGTTGTGACAATGTATGCTTGGGTCTCACTTCAGCGTCGCAGCGGGCTAACTGCTGCCC
TTCCCCATGCTCCTTTCTATCCATTCCACAGGGAAGAGAACTTCTGGCTGCTTCTAGCGG
ACACTGTGTCAAACGAAGTTTGGTTATCCCAGAAAATCAGCTTCATGGATGAGGCTACCG
CCATAACTGCAGCATCAAAAGCTATACAAGATACCCAGGAAGCATTGGGAGCAAGCCCAA
TGGAAATAGGAGTTGCAGTTAGGGAGGCGGTTGACAGAGTGAAGAAAGGCAGTAGGCTGG
TGATGGGCAAGTTCCAGGCCCCAGCAGAGGGCAATCACAACCTGACATCCTTCTGCTTGT
GTGATGCATGGATAGGATGCGACAGCAAGACTAGCTTTAAGCTGAAGGTTCTGAAGCGCA
GCCGTGCGGGAACAAGAACCTATGTGCCTGAAGAAGGGCCAGTGGCAGAGGATGGCATTG
AGGAGGAAGAGGAGGAGGAAGAAGAGGAGTATGACGATTACGAGAGCGAGTACAGCGAGG
ATGAGGAAGAAGAAAAGAAGAAGGGAAAAGGCAAGGTTGCAAATGGAGCAGCACATCAAA
GGGCAAGCTCTGATATAGATTCAGGCAGCGACGATTGATACTATACCTTGTGATGTTGAA
CCATAGATGATTAACATCCATGTTTTTTGCCATTTGACTTATGAAACTTGAGAGAAAAAA
AATCTCCCATCAACTTATAGAGCATGCGGTAATAGTTACTGAATTTTCCATTTTGTTTAT
TATTCTTGCGCTGTATGAATGGAACCAATAACGGAGAATAGGCTGTGAAGTCAAATCGGC
AGGATTATCTTG

Homology of Contig U35_16022 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g24180.1	682	protein\|heat shock protein binding protein, putative, expressed
Brachypodium v1_2	Bradi5g05060.1	682
Arabidopsis v10	AT1G79940.1	687	\| Symbols: ATERDJ2A \| DnaJ / Sec63 Brl domains-containing protein \| chr1:30070023-30073237 FORWARD LENGTH=687