barSeed - Barley Seed Development Database

Probe CUST_38610_PI390587928

Source Contig U35_16024

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38610_PI390587928	Hv_44K_v2	ATGCAAAATACCAGGGCAGGGCTTCAATCCCATGTCTAAATAGATGGTTTGGATCTCCTT	25	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80474.1	353	2e-24	65 - 124	100	60 / 60	plus	None
MLOC	MLOC_80474.2	1006	2e-24	53 - 112	100	60 / 60	plus	ABC05208
MLOC	MLOC_80474.3	984	2e-24	53 - 112	100	60 / 60	plus	ABC05208
MLOC	MLOC_80474.4	943	2e-24	53 - 112	100	60 / 60	plus	ABC05208
JLOC1	JLOC1_53578.4	1652	8e-25	56 - 115	100	60 / 60	plus
JLOC1	JLOC1_53578.3	1715	8e-25	56 - 115	100	60 / 60	plus
JLOC1	JLOC1_53578.2	1655	8e-25	81 - 140	100	60 / 60	plus
JLOC1	JLOC1_53578.1	1718	8e-25	81 - 140	100	60 / 60	plus
Harvest21	ABC05209	574	3e-25	26 - 85	100	60 / 60	plus
Harvest35	U35_16024	638	3e-25	26 - 85	100	60 / 60	plus

Contig Sequence (638 bp)

>U35_16024 638 Hv_44K_v2
ATGGTTCAATCCCGGCAGGGCTTTTATGCAAAATACCAGGGCAGGGCTTCAATCCCATGT
CTAAATAGATGGTTTGGATCTCCTTCCCTACCAGGGCTTGGTCGCACGATCCCAAATCCC
AACTACTTGTTCTTCGCCGCCGGCGTTCTTCGCCGGATCTGACCGGGTGCGGAAAAGCAA
GCCAGTCCCCAAATCCCAACTACAAAAAGAGCAGTTAATCTCCTCTGGCTCTGGCTGCTA
CCGTAGATCTAGCCCTCTTTTCGTTCTTGGTTTTGTGGCCATGTCTGACAGCGAGAAAGA
GGTGCCAGCCACAGACGGAGCCGCGTCCCGGGGGGCCGACTGGGAGGTGGTGACCCTCAC
CGCGTCCACCTACGCCGCGGCGCCCGGCGGACCCCAAGGAGCAGCAGAGGGCAAGAGGCT
CGGAGAGGGCAGCAAAGACAGCCAGGGAACGCTGCTCATGTCGGACCACTTCGTGTTCCC
CCCCAGCGAGCACGAGAACCTGCCCATAGAGACCGCCCTTCTCGAGCCTCAGGAAAGCAC
CAGCGTGGACGCCGCCGCCGCCGCCTTCAAGAATGTCGGTGGGGGCTACGATGATGATGG
GTCCGAGACGGTCAAGTACTATGACGAGGGCAAGAGCC

Homology of Contig U35_16024 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None