barSeed - Barley Seed Development Database

Probe CUST_38607_PI390587928

Source Contig U35_16025

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38607_PI390587928	Hv_44K_v2	ATCACCACAATTAAATTCCTAGGTTTTGTGGCCATGTCTGACAGCGAGAAAGAGGTGCCA	261	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.240	0.312	1.398	2.350	1.176	1.303
Raw	10.325	20.894	82.684	222.662	39.971	47.571

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80474.2	1006	2e-24	338 - 397	100	60 / 60	plus	ABC05208
JLOC1	JLOC1_53578.3	1715	8e-25	341 - 400	100	60 / 60	plus
Harvest21	ABC27429	596	3e-25	168 - 227	100	60 / 60	plus
Harvest21	ABC05211	620	3e-25	208 - 267	100	60 / 60	plus
Harvest21	ABC05210	640	3e-25	262 - 321	100	60 / 60	plus
Harvest35	U35_16028	661	3e-25	234 - 293	100	60 / 60	plus
Harvest35	U35_16026	650	3e-25	238 - 297	100	60 / 60	plus
Harvest35	U35_16025	640	3e-25	262 - 321	100	60 / 60	plus

Contig Sequence (640 bp)

>U35_16025 640 Hv_44K_v2
CAATCCCATGTCTAAATAGATGGTTTGGATCTCCTTCCCTACCAGGGCTTGGTCGCACGA
TCCCAAATCCCAACTACTTGTTCTTCGCCGCCGGCGTTCTTCGCCGGATCTGACCGGGTG
CGGAAAAGCAAGCCAGTCCCCAAATCCCAACTACAAAAAGAGCAGTTAATCTCCTCTGGC
TCTGGCTGCTACCGTAGATCTAGCCCTCTTTTCGTTCTTGGATAATCTTGGTTACCTAGG
TTCAGTTGTAATCGGTTGTACATCACCACAATTAAATTCCTAGGTTTTGTGGCCATGTCT
GACAGCGAGAAAGAGGTGCCAGCCACAGACGGAGCCGCGTCCCGGGGGGCCGACTGGGAG
GTGGTGACCCTCACCGCGTCCACCTACGCCGCGGCGCCCGGCGGACCCCAAGGAGCAGCA
GAGGGCAAGAGGCTCGGAGAGGGCAGCAAAGACAGCCAGGGAACGCTGCTCATGTCGGAC
CACTTCGTGTTCCCCCCCAGCGAGCACGAGAACCTGCCCATAGAGACCGCCCTTCTCGAG
CCTCAGGAAAGCACCAGCGTGGACGCCGCCGCCGCCGCCTTCAAGAATGTCGGTGGGGGC
TACGATGATGATGGGTCCGAGACGGTCAAGTACTATGACG

Homology of Contig U35_16025 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None