- Probe CUST_38606_PI390587928
- Source Contig U35_180
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38606_PI390587928 | Hv_44K_v2 | AAGGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTCCATGCCAGT | 105 | GeneList: darkturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.346 | 0.416 | 1.186 | 1.869 | 1.118 | 1.295 |
| Raw | 5789.810 | 10515.527 | 27206.100 | 67480.467 | 14251.860 | 17913.800 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_72170.2 | 1440 | 2e-23 | 749 - 806 | 100 | 58 / 58 | plus | ABC00149 ABC00235 ABC00865 ABC36987 ABC38238 ABC39188 ABC48865 ABC51028 |
| MLOC | MLOC_72170.1 | 1389 | 2e-23 | 763 - 820 | 100 | 58 / 58 | plus | ABC00149 ABC00235 ABC00865 ABC38238 ABC48865 |
| JLOC1 | JLOC1_48005.1 | 1772 | 1e-23 | 719 - 776 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC00458 | 600 | 3e-25 | 106 - 165 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00865 | 1659 | 4e-24 | 561 - 618 | 100 | 58 / 58 | plus | ABC00865 |
| Harvest21 | ABC00356 | 1440 | 4e-24 | 812 - 869 | 100 | 58 / 58 | minus | |
| Harvest21 | ABC00235 | 1468 | 1e-23 | 223 - 279 | 100 | 57 / 57 | plus | ABC00235 |
| Harvest21 | ABC46151 | 407 | 2e-22 | 51 - 108 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_180 | 601 | 3e-25 | 106 - 165 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_119 | 1408 | 4e-24 | 582 - 639 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_49 | 1405 | 4e-24 | 606 - 663 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_76 | 1947 | 1e-23 | 223 - 279 | 100 | 57 / 57 | plus | |
| Harvest35 | U35_31729 | 519 | 2e-22 | 383 - 439 | 98 | 56 / 57 | plus |
Contig Sequence (601 bp)
>U35_180 601 Hv_44K_v2 GACGCTCCCATGTTTGTCTGTGGTGTCAACGAGAAGGAATACAAGTCAGACATCGACATT GTCTCCAATGCTAGCTGCACCACCAACTGCCTTGCTCCTCTTGCTAAGGTTATCAATGAC AGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTCCATGCCAGTGCTGCTTGGAATGAT GTTGAAGCTAGCAGCCCTTCCCCAGATCTCACGCGACGCACAAGCCAGCGACGATGAGGC CCTCGGTGATGAGATCCGCCGCGCAGCTTCTCCGCCGCCGCAGCTACTCCTCCGCGTCCG GGCAGCAGGAGCGGAAGGTGGCCATCCTCGGTGCGGCCGGTGGCATCGGGCAGCCGCTGT CTCTCCTCATGAAGCTGAACCCCCTCGTCTCCTCCCTCTCTCTCTACGATATCGCGGCCA CCCCGGGCGTCGCTGCCGACGTTTCCCACATCAACTCCCCTGCCCTGGCCAAGGGGTTCA TGGGGGACGATCAGCTCGCGGAGGCGTTGGATGGGGCCGACCTGGTGATCATCCCGGCCG GCGTCCCGAGGAAGCCCGGCATGACCAGGGACGACCTCTTCACATTAACGCCGGCATCGT T
Homology of Contig U35_180 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g46070.1 | 341 | 2e-62 | protein|lactate/malate dehydrogenase, putative, expressed |
| Brachypodium v1_2 | Bradi2g45200.1 | 341 | 1e-68 | |
| Arabidopsis v10 | None |