barSeed - Barley Seed Development Database

Probe CUST_38601_PI390587928

Source Contig U35_16028

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38601_PI390587928	Hv_44K_v2	ATCACCACAATTAAATTCCTAGGTTTTGTGGCCATGTCTGACAGCGAGAAAGAGGTGCCA	233	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80474.2	1006	2e-24	338 - 397	100	60 / 60	plus	ABC05208
JLOC1	JLOC1_53578.3	1715	8e-25	341 - 400	100	60 / 60	plus
Harvest21	ABC27429	596	3e-25	168 - 227	100	60 / 60	plus
Harvest21	ABC05211	620	3e-25	208 - 267	100	60 / 60	plus
Harvest21	ABC05210	640	3e-25	262 - 321	100	60 / 60	plus
Harvest35	U35_16028	661	3e-25	234 - 293	100	60 / 60	plus
Harvest35	U35_16026	650	3e-25	238 - 297	100	60 / 60	plus
Harvest35	U35_16025	640	3e-25	262 - 321	100	60 / 60	plus

Contig Sequence (661 bp)

>U35_16028 661 Hv_44K_v2
TCGAGCACTGTTGGCCTATGGAGGGTTGGCTTGCTTGGTCGCACGATCCCAAATCCCAAC
TACTTGTTCTTCGCCGCCGGCGTTCTTCCCAACTCCGGGTGCGGAAAAGCAAGCCAGTCC
CCAAATCCCAACTACAAAAAGAGCAGTTAATCTCCTCTGGCTCTGGCTGCTACCGTAGAT
CTAGCCCTCTTTTCGTTCTTGGATAATCTTGGTTCAGTTGTAATCGGTTGTACATCACCA
CAATTAAATTCCTAGGTTTTGTGGCCATGTCTGACAGCGAGAAAGAGGTGCCAGCCGCGT
CCCGGGGGGCCGACTGGGAGGTGGTGACCCTCACCGCGTCCACCTACGCCGCAGCGCCCG
GCGGACCCCAAGGAGCAGCAGAGGGCAAGAGGCTCGGAGAGGGCAGCAAAGACGGCCAGG
GAACACTGCTCATGTCGGACCACTTCGTGTTCCCCCCCAGCGAGCACGAGAACCTGCCCA
TAGAGACCGCCCTTCTCGAGCCTCAGGAAAGCACCAGCGTGGACGCCGCCGCCGCCGCCT
TCAAGAATGTCGGTGGGGGCTACGATGATGATGGGTCCGAGACGGTCAGTACTATGACGA
GGGCAAGAGCCTGTCGGTACATGATGCCGAGATGATGATGGGTGACGTGGCTGAGTTCTA
C

Homology of Contig U35_16028 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None