barSeed - Barley Seed Development Database

Probe CUST_38600_PI390587928

Source Contig U35_183

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38600_PI390587928	Hv_44K_v2	ATATTGTTCTATCCCACTGCTATTGGTTCTGAACCCCAGGATATGAACCTGGATTCCCGT	768	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362715	2775	2e-24	718 - 777	100	60 / 60	plus	ABC04144 ABC04430 ABC04431 ABC15220 ABC31625
MLOC	MLOC_61790.2	1367	2e-24	580 - 639	100	60 / 60	plus	ABC04144
MLOC	MLOC_61790.1	1563	2e-24	1072 - 1131	100	60 / 60	plus	ABC04144
JLOC1	JLOC1_40396.1	1799	8e-25	947 - 1006	100	60 / 60	plus
Harvest21	ABC04144	1445	3e-25	703 - 762	100	60 / 60	plus	ABC04144
Harvest35	U35_183	1503	3e-25	769 - 828	100	60 / 60	plus

Contig Sequence (1503 bp)

>U35_183 1503 Hv_44K_v2
GAAAAGCAGCTCGCAAGTTGCCGTATAAAGCCAAGGAAGGCGGTCTTCCCCAAAGGCGCC
TTCCTTTCCCCTCCTCCCCATCCGCACACCGCCGCCGCCGGGCCACCTTGCTTCCCCCAC
CTCCTTGCGCCGCCGGGGTCCGGCCCTGCTCGCCTTCCCCGCCGTCGCAGTCGCACCGTC
CTCCACCGTCGGAGGGAGAAAGCAGCAGCGGCCAGAGCGGAACAGCGCGGGCCGAGGAAG
GGGATGGCCGGCGCCGGGAGGAGAGTGGCGGTCGCCGCCGTGCAGTTCGCCTGCACCGAC
ACGGTGGCCGACAACGTCGCCGCCGCCGAGAGATTGATTAGAGAAGCTCATAAGAAAGGC
GCGAACATTGTCCTCATTCAGGAGCTATTTGAGGGGCACTATTTCTGTCAAGCTCAAAGG
ATGGATTTCTTTGGGCGTGCCAAGCCTTATAAAGAGAACCCGACTATAATGAGAATGCAA
AAGCTTGCAAAGGAGTTGGATGTTGTAATACCTGTAAGTTTCTTTGAAGAAGCTGGCAAC
GCTCATTACAATTCTGTGGCCATAATTGATGCTGATGGCACCGATCTTGGGCTATACCGC
AAATCGCACATTCCAGATGGACCAGGTTATCAAGAGAAATTTTATTTCAACCCGGGTGAC
ACTGGATTCAAGGCTTTCAAAACAAAGTATGCAACAATTGGTGTTGGAATTTGCTGGGAT
CAGTGGTTTCCAGAGACTGCAAGGGCTATGGTGCTACAGGGGGCGGAAATATTGTTCTAT
CCCACTGCTATTGGTTCTGAACCCCAGGATATGAACCTGGATTCCCGTGAACACTGGAAG
CGTGTCATGCAAGGCCATGCCGGCGCTAACTTGGTTCCCCTTGTTGCTTCTAACCGGATA
GGAAAGGAAACCGTCGAGACTGAGCATGGCAACAGCACCATAAAGTTCTACGGGAACTCG
TTCATCGCAGGGCCAACTGGAGAAATCGTGAAGCTCGCAAACGACAAGGACGAGGAGGTG
CTGGTGGCAGAGTTCGACTTGGACGAGATCAAATCCACGAGACACGGCTGGGGGATATTC
AGGGACAGGCGCCCTGATCTATACAAAGTACTGCTGACGTTGGATGGCAAGACATCATCA
TCATCCTAGGTTCCACTTTTTATGAAAGAGGAAATGAGCTCCACAATGCTGGGAGAACAC
CAAACGGACAAACGGTAGATCTTCATGTCTTTCCCCCTGCATAAATAGCGATCTGCCAGT
ACGTTTCCAACTTGGTTGGTGATTTCCCACCAATATATAACATCAATAAAAATACCGTCA
TGTGATGTTGATGTGACCGGCAGCAACATATTTGAACTAAAGCAATATAATGATGATGCA
TCGCTGCTTCACAGTTGTTCAAACAAAAAAAAAAAAAAAAAAGTTGTTCAAACAATTTTT
TTACTGTTTTTTTACCGGCAGGATTAGCATCTTTGACCCAAAAAAGAAAAAAAAAAAAAA
AAA

Homology of Contig U35_183 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g33080.1	302	0.0	protein\|N-carbamoylputrescine amidase, putative, expressed
Brachypodium v1_2	Bradi3g44960.1	303	0.0
Arabidopsis v10	AT2G27450.2	326	5e-166	\| Symbols: NLP1, ATNLP1, CPA \| nitrilase-like protein 1 \| chr2:11737666-11739577 REVERSE LENGTH=326