barSeed - Barley Seed Development Database

Probe CUST_385_PI390587928

Source Contig U35_9333

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_385_PI390587928	Hv_44K_v2	ACTCTGGTTCGTGAGGACGACATCGTTGACGAGGCAAACTACCTGAGGGAGGCGAACGAT	61	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.115	0.096	1.360	2.572	1.270	1.230
Raw	2.888	3.712	82.975	237.928	43.564	45.326

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68007.2	2665	2e-24	1365 - 1424	100	60 / 60	plus	ABC37246 ABC37284
MLOC	MLOC_68007.1	2798	2e-24	1340 - 1399	100	60 / 60	minus	ABC37246 ABC37284
MLOC	MLOC_68007.3	2818	2e-24	1475 - 1534	100	60 / 60	minus	ABC37246 ABC37284
JLOC1	JLOC1_44960.2	2648	8e-25	1371 - 1430	100	60 / 60	plus
JLOC1	JLOC1_44960.1	2606	8e-25	1291 - 1350	100	60 / 60	plus
Harvest21	ABC20304	498	3e-25	62 - 121	100	60 / 60	plus
Harvest35	U35_9333	498	3e-25	62 - 121	100	60 / 60	plus

Contig Sequence (498 bp)

>U35_9333 498 Hv_44K_v2
GGAGGGGAACAGGGAGCTTGCTCAGAGGTTGCAGGATGCGGAGCACGTCTCCTCCGCTGT
TACTCTGGTTCGTGAGGACGACATCGTTGACGAGGCAAACTACCTGAGGGAGGCGAACGA
TCGGCTGACGAGGCAGATCGAGCAGCTACACAGCGACCACTGCGCCCACGTCGAGGAGCT
CGTCTACCTCAAGTGGGTCAACGCCTGCCTCCGCCACGACCTCCGTAGCGGCGACCACCA
CCCCTCGTCCGCTCAGCAGGATCAGGACGGGGTTGCCAGCGCAATGCCGTCGGCCATGGA
TCTCAGCAAGAGCATGAGCTACCGCTCCAGCGAGAAGGCCAAGGAGCTCATGCTCCAGTA
TGGCAGCCTCGGCCTCGACGGCTACCGACCCCGCGCTCTTCTCGCCGCTCAACGACTCCA
TGTACGGCGACGGCGAAAGTCACCAGCAGCGTGTTGGAGATCAGCACGAGCCAGGGCGGA
GTCCGGTAGTGCCGTCGC

Homology of Contig U35_9333 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None