barSeed - Barley Seed Development Database

Probe CUST_3859_PI390587928

Source Contig U35_19952

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3859_PI390587928	Hv_44K_v2	ATCGAAATCACTGTAGTATGTGTAGTGCCAACATCAGATTTTGCAATACAAGGTCATTTC	735	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.127	3.541	1.347	0.640	0.298	0.158
Raw	245.681	436.793	147.082	114.470	19.736	10.119

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63155.1	4837	2e-24	4737 - 4796	100	60 / 60	plus	ABC13735 ABC16595
JLOC1	JLOC1_41362.1	4121	8e-25	4003 - 4062	100	60 / 60	plus
Harvest21	ABC16595	793	1e-24	735 - 793	100	59 / 59	plus	ABC16595
Harvest35	U35_19952	818	3e-25	736 - 795	100	60 / 60	plus

Contig Sequence (818 bp)

>U35_19952 818 Hv_44K_v2
GGCTCGCCTCCGTCGCCTCCTCCCTCGGCGTGCCGCTCCCGGACCGCGCCCGCTTCTTCC
GCTCGCAGATGCAGACCATCATCTCCCGCGCCTGCAACGAGCTCGGGGTCAAGGCCGTCC
CCAGCCGCCGCTGCGTCTCCCTGCTGCTGTGGCTCGAGGAGAGGTACGAGACCGTCTACA
GCCGCCACCCCGGCTTCCAGAAGGGCACCAAGCCGCTGCTCACGCTCGACAACCCATTTG
CCACAAACCTGCCGGACAACCTCTTCGGCGACAAGTGGGCATTCGTGCAGCTCCCCTTCG
ACGATGTGAGGGAGGAGGTGGAGTTGCTGGAGAGGAGGTACGCGTTCGGGGCGGGGCTCG
ATTTGGACCTTCTGGGGTTTGAGCTCGATGAAACCACGCTAGTCCCTGGAGTTGCCGTGG
AATCTTCGCGCGCCAAGCCTCTGGCCGCTTGGATGAATGGCTTGGAGATCTGTTCTATGG
AGGTTGACACCGGCAGAGCGAACCTGGTCCTGTCAGCCGGGGTGTCGACAAGATACGTCT
ACGCCGGGTACCAGAAGAGCCCCGCGACGACGCAGGAGGCAGAAGCGTGGGAGGCGGCGA
AGAAGGCCTGCGGCGGCCTGCACTTCCTGGCCATCCAAGAGAACCTGAACTCCGATAGTT
GCGTGGGTTTCTGGCTCCTGCTGGACCTGCCGCCACCGCCTGTATGATCTGGCTAGCGTG
TGTTTTGTGACTCCTATCGAAATCACTGTAGTATGTGTAGTGCCAACATCAGATTTTGCA
ATACAAGGTCATTTCATTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19952 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g39740.1	393	4e-114	protein\|psaB translation factor, putative, expressed
Brachypodium v1_2	Bradi3g48480.1	395	6e-115
Arabidopsis v10	AT3G08010.1	374	1e-86	\| Symbols: ATAB2 \| RNA binding \| chr3:2556046-2557426 FORWARD LENGTH=374