barSeed - Barley Seed Development Database

Probe CUST_38596_PI390587928

Source Contig U35_28000

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38596_PI390587928	Hv_44K_v2	TAGGCACTTGTTCAGAGCTTATCTTTGCACCCATAGACGCATCTTTCAGTGACGATTCAC	171	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365312	2883	2e-24	1874 - 1933	100	60 / 60	plus	ABC31285
MLOC	MLOC_79063.1	2445	2e-24	1109 - 1168	100	60 / 60	minus	ABC31285
MLOC	MLOC_79063.3	1999	2e-24	668 - 727	100	60 / 60	minus	None
MLOC	MLOC_79063.2	2482	2e-24	1059 - 1118	100	60 / 60	minus	ABC31285
JLOC1	JLOC1_52684.1	2411	8e-25	1278 - 1337	100	60 / 60	plus
Harvest21	ABC23833	622	3e-25	172 - 231	100	60 / 60	plus
Harvest35	U35_28000	624	3e-25	172 - 231	100	60 / 60	plus

Contig Sequence (624 bp)

>U35_28000 624 Hv_44K_v2
CTCGTCTTGGAGGATTTAGCGGCCAGGTTATACTTCCTTTGGCACACACGTTTGACCCTG
AAGAATTCTTGGAAGTTATCAAGATAGGAAATGCCAGTAACTATCAAGATACACTCATGC
ATCGCGATCTTTTTCTCTTGCAGATGTACAACGGGGTTGACGAGAACACCATAGGCACTT
GTTCAGAGCTTATCTTTGCACCCATAGACGCATCTTTCAGTGACGATTCACCGCTGCTGC
CTTCTGGTTTCCGCATCATTCCGATTGAGTCCCCTCTTGACACGTCTAGCCCGAACTGCA
CGTTGGACCTCGCGTCCACCCTCGAGGTTGGAACACCCGGAAGCAGGATAACCGGTCACT
CCAGGAGCGGCTCGAAGGCTGTGATGACGATCGCGTTTCAGTTTGCCTTCGAGAGCCACC
TGCAGGACAGCGTGGCGGTCATGGCGCGGCAGTACATGCGCAGCATCATCTCGTCGGTGC
AGCGGATAGCGCTGGCGCTGTCGTCCTCGCACCTCGTGCCGCATGGAAGCTCTCGTCTCG
CCCCCCCTGTTACCCCGGAGGCGGCCACGCTCTCCCGATGGATTGTCCAGAGCTACAGGT
TTCACTTTGGGGCCGAGCTCATCA

Homology of Contig U35_28000 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g10320.1	637	4e-111	protein\|class III HD-Zip protein 8, putative, expressed
Brachypodium v1_2	Bradi2g06210.1	834	6e-122
Arabidopsis v10	AT1G52150.2	837	3e-73	\| Symbols: ATHB-15, ATHB15, CNA, ICU4 \| Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein \| chr1:19409913-19413961 REVERSE LENGTH=837