barSeed - Barley Seed Development Database

Probe CUST_38590_PI390587928

Source Contig U35_28003

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38590_PI390587928	Hv_44K_v2	TTGGGGTGAGGTTGTAAGCCATCGGTGCTTTCTATGTCGCTGTTGAACTGCATCATTAGT	0	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52788.2	2256	2e-24	1579 - 1638	100	60 / 60	plus	ABC00127 ABC00169 ABC00333 ABC00902 ABC00930 ABC50944
Harvest21	ABC46863	340	3e-25	47 - 106	100	60 / 60	minus
Harvest21	ABC00902	1661	3e-25	1529 - 1588	100	60 / 60	plus	ABC00902
Harvest21	ABC52941	477	1e-23	55 - 114	98	59 / 60	minus
Harvest21	ABC50515	645	1e-23	140 - 196	100	57 / 57	minus
Harvest21	ABC38886	140	1e-23	63 - 119	100	57 / 57	minus
Harvest21	ABC00674	1737	1e-23	1549 - 1605	100	57 / 57	plus
Harvest21	ABC00169	667	1e-23	52 - 108	100	57 / 57	minus	ABC00169
Harvest35	U35_28003	294	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_14083	1685	3e-25	1546 - 1605	100	60 / 60	plus
Harvest35	U35_38629	693	1e-23	179 - 235	100	57 / 57	minus
Harvest35	U35_14085	1470	1e-23	1275 - 1331	100	57 / 57	plus
Harvest35	U35_14074	710	1e-23	603 - 659	100	57 / 57	plus

Contig Sequence (294 bp)

>U35_28003 294 Hv_44K_v2
ACTAATGATGCAGTTCAACAGCGACATAGAAAGCACCGATGGCTTACAACCTCACCCCAA
AACAGGACGGCAAAGCAACATGTAGTTAAAGATAGGCGGCAGAGGAGACGGATCCTCCGT
CGAGCGGACGAGCAGATCAGTAGTCGCCGTCCTCCTCGCCATCCTCGTCGTCGCCCTCAT
CACCGTCCTCGCCCTCGTCGAACTCGGCGCCAACTTCCTCGTAGTCCTTCTCCAGGGCAG
CGAGATCCTCACGGGCCTCGGAGAACTCTCCCTCCTCCATGCCCTCGCCCACGT

Homology of Contig U35_28003 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None