barSeed - Barley Seed Development Database

Probe CUST_3858_PI390587928

Source Contig U35_19953

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3858_PI390587928	Hv_44K_v2	CGAAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAGGACACTGCCAGAGAAATCTT	930	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359713	1582	2e-24	956 - 1015	100	60 / 60	plus	ABC15563
MLOC	MLOC_52518.2	1878	2e-24	670 - 729	100	60 / 60	minus	ABC15563
MLOC	MLOC_52518.3	1728	2e-24	553 - 612	100	60 / 60	minus	ABC15563
MLOC	MLOC_52518.1	1810	2e-24	687 - 746	100	60 / 60	minus	ABC15563
JLOC1	JLOC1_33661.1	1864	8e-25	1013 - 1072	100	60 / 60	plus
Harvest21	ABC23704	491	1e-24	433 - 491	100	59 / 59	plus
Harvest35	U35_19953	990	3e-25	931 - 990	100	60 / 60	plus

Contig Sequence (990 bp)

>U35_19953 990 Hv_44K_v2
TCGAGTTCTGTTGGCCTAGGAATCCCTCTCCCACCACCCACCTACCCAAATCCCAGCCTC
CCTAAAACCCTAGGCCGCCGCCGCAATGCAGGCCGCCGCCGCCGTCCACCGGCCGCACCT
CCTGGCGGCGTCCCCGCTGGGGGCCCGCGCCAGCCGGCGGCCCTCCACGGTCCGCATGGC
GCTCCGCGAGGACGGCCCGTCCGTGGCCATCGTGGGCGCCACCGGCGCCGTGGGGCAGGA
GTTCCTCCGCGTCATCACAGCCCGCGACTTCCCCTACCGCAGCCTCCGCCTCCTCGCCAG
CGAGCGCTCCGCGGGCAAGAGCATCGAGTTCGAGGGCCAGGACTACACCGTCCAGGACCT
CGCGGCGCCCGGGGCATTCGAGGGGATCGACATCGCGCTCTTCAGCGCCGGTGGCGGCGT
CAGCCGCGCACACGCGCCAGCCGCCGTCGCCAGCGGCGCCGTCGTCGTGGACAACAGCTC
CGCCTACCGGATGGACTCCGACGTGCCGCTCGTCATCCCGGAGGTCAACCCCGAGGCCAT
GGCCGACGTCCGGCTCGGGAAAGGGGCTATCGTGGCCAACCCCAACTGCTCTACCATCAT
CTGCCTCATGGCTGTCACGCCTCTGCATCGCCACGCCAAGGTCAAAAGGATGGTTGTCAG
CACATACCAAGCAGCAAGTGGTGCTGGTGCTGCAGCCATGGAAGAACTCAAACTTCAGAC
TCAAGAGGTCTTGGAAGGAAAGCCACCAACCTGCAACATTTTCAGTCAACAGTATGCTTT
TAATATATTTTCGCATAATGCACCTATTGTTGAAAATGGCTATAACGAGGAAGAGATGAA
AATGGTGAAGGAAACCAGAAAAATCTGGAATGACAAGGATGTACGAGTAACTGCAACTTG
TATACGGGTTCCTACGATGCGTGCACATGCCGAAAGTGTGAATCTACAGTTTGAAAAGCC
ACTTGATGAGGACACTGCCAGAGAAATCTT

Homology of Contig U35_19953 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55280.1	376	4e-162	protein\|semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g07910.1	374	2e-162
Arabidopsis v10	AT1G14810.1	375	3e-128	semialdehyde dehydrogenase family protein \| chr1:5102684-5104633 REVERSE LENGTH=375