- Probe CUST_38588_PI390587928
- Source Contig U35_28004
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38588_PI390587928 | Hv_44K_v2 | GACAAATGTTGTATAGATTTCTTGCCTCGAAACAAATTCTATTTGTTCTTCCCCAGTAGA | 9 | GeneList: bisque4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.632 | 2.347 | 1.793 | 0.765 | 0.486 | 0.417 |
| Raw | 28.611 | 68.861 | 42.321 | 30.095 | 5.681 | 4.818 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_72188.1 | 826 | 2e-24 | 132 - 191 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_72188.2 | 1146 | 2e-24 | 132 - 191 | 100 | 60 / 60 | minus | ABC36848 |
| JLOC1 | JLOC1_48019.2 | 1145 | 8e-25 | 965 - 1024 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48019.1 | 548 | 8e-25 | 368 - 427 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28004 | 234 | 3e-25 | 10 - 69 | 100 | 60 / 60 | minus |
Contig Sequence (234 bp)
>U35_28004 234 Hv_44K_v2 ACACATATTTCTACTGGGGAAGAACAAATAGAATTTGTTTCGAGGCAAGAAATCTATACA ACATTTGTCAAGACAAACAACAACTTAATAGTAACACCACAGGATTAACACAAGGACATG CTCAGGTCCTCGCAACAAGCCTTTGTTGCCGCATGTGTCTGTTCTCTTTCTGCCGCTGAA ATCGACACAGGGACGCCTTCTCCTTGAGCTCTTGGAAAGCGCGCATAGTGTCGG
Homology of Contig U35_28004 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |