- Probe CUST_38567_PI390587928
- Source Contig U35_4912
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38567_PI390587928 | Hv_44K_v2 | GAGACATGTGTATTGTTCTTAATGCGAAAGATATCTGTGTTACAGGAAGAAAAATGACTG | 434 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.760 | 1.243 | 1.085 | 0.707 | 0.306 | 0.239 |
| Raw | 844.970 | 848.371 | 717.579 | 703.132 | 111.727 | 95.299 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_37672.1 | 1171 | 2e-24 | 476 - 535 | 100 | 60 / 60 | plus | ABC11235 |
| Harvest21 | ABC11235 | 1256 | 3e-25 | 441 - 500 | 100 | 60 / 60 | plus | ABC11235 |
| Harvest21 | ABC11236 | 493 | 1e-24 | 435 - 493 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_4913 | 1304 | 3e-25 | 489 - 548 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_4912 | 494 | 3e-25 | 435 - 494 | 100 | 60 / 60 | plus |
Contig Sequence (494 bp)
>U35_4912 494 Hv_44K_v2 AAAGAACCACCACAGCACCTCGCCGCCGCCGCCGACGACGATGTGGCGTTCCCGAGCTCG CGCTCTCCTCCTGCTCCGCTCGTCCGCCCCACCGCCGCAGCAAAATCCACTTCGGAGCCT GGCCCGAGCCCCGCCCCCGCCACCACGCCTTCTCTCCCGCTTCCTCTCCTCCTCCTCCTC CCCCCAGAAGGTCCCGCCGGCCGCCTCCCCTCCCTCGTCCTCCTCGCCCGGCGCCGCTCC CGGATCAGCTGCGCCGCCGGCCTACACCGGAAACCTGAAGAAAGCACTTGCAGGGTTGAG GAGAATTGATTTANAAGGGTTGCGGTGGCGTGTTTTTGATGCAAAGGGCCAGGTACTTGG ACGGTTGGCATCCCAAATAGCTGTTGTGCTTCAAGGCAAGGACAAGCCAACCTATGCACC TCATGTGGAAGCTGGAGACATGTGTATTGTTCTTAATGCGAAAGATATCTGTGTTACAGG AAGAAAAATGACTG
Homology of Contig U35_4912 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |