barSeed - Barley Seed Development Database

Probe CUST_38565_PI390587928

Source Contig U35_4913

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38565_PI390587928	Hv_44K_v2	GAGTCACATTCATATCTTGAATGGAGAAGATGGTTTATTAGGTCGAGCTATTTACTCAAA	1230	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.133	2.021	1.257	0.813	0.341	0.334
Raw	1211.579	1812.781	979.572	987.980	143.347	155.080

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_24413.1	1184	1e-22	1128 - 1183	100	56 / 56	plus
Harvest21	ABC11235	1256	3e-25	1183 - 1242	100	60 / 60	plus	ABC11235
Harvest35	U35_4913	1304	3e-25	1231 - 1290	100	60 / 60	plus

Contig Sequence (1304 bp)

>U35_4913 1304 Hv_44K_v2
ACTGCCTCAGCTCCCGTGCTCCGCGTCTCCACCACACAAGGGAAAGAACCACCACAGCAC
CTCGCCGCCGCCGCCGACGACGACGACGACGACGATGTGGCGTTCGCGGGCTCGCGCTCT
CCTCCTGCTCCGCTCGTCCGCCCCACCAACGCAGCAAAGTCCACTTCGGAGCCTGGCCCG
AGCCCCGCCCCCGCCACCACGCCTTCTCTCCCGCTTCCTCTCCTCCTCCTCCTCCCCCCA
GAAGGCCCCGCCGGCGGCCTCCCCTCCCCCGTCCTCCTCGCCCGGCGCCGCTCCCGGATC
CGCTGCACCGCCGGCCTACACCGGAAACCTGAAGAAAGCACTTGCAGGGTTGAGGAGAAT
TGATTTAGAAGGATTGCGGTGGCGTGTTTTTGATGCAAAGGGCCAGGTACTTGGACGGTT
GGCATCCCAAATAGCTGTTGTGCTTCAAGGCAAGGACAAGCCAACATATGCACCTCATGT
GGAAGCTGGAGACATGTGTATTGTTCTTAATGCGAAAGATATCTGTGTTACAGGAAGAAA
AATGACTGACAAAATTTACTACTGGCATACAGGGTATATTGGCCATCTGAAGGAAAGAAA
GCTCAAGGACCAGATGGCAAAAGACCCAACTGAAGTGATCCGTAAAGCTGTCATGCGCAT
GCTTCCCCGCAATAAATTGCGTGATGATAGGGATCGTAAGCTGAGGATATTTGCTGAAGG
CGAGCACCCATTCCACGACCGGCCTCTCGAGCCTTTCGTCATGCCGCCACGCCAAGTGCG
TGAGATGCGCCCCCGGGCAAGACGTGCGATGATAAGGGCACAGAAGAAAGATCAGGACAG
GGCAGCTAAGAAAGCCGAGGGAGAAGCAGCTAAGAATGGCAAAGCTGCGGTCGCTGCATA
AGTCACCTTCAGATGTGTGTGGACTATGGAGACCGATGATTCGAGCCACTAGGGTTCTAC
CCACTGCACGTTCTGAATGATGACCTGCGTATCTCTTTTCTCTTTGATGACATGTAGTCT
TTTGTGTTGGATTTCACAGACAGGGTGCACTAGAATCTTATCAAGCTTTGTTAAGGCAGC
AAGATTGCTGAGAAGCCTGTTGAGTTGAGTTGAGAGGCACTAAACCTGGAAACGCTCAAC
TCCTCATTCTGAATTTCCTTTTCGATCCTAAAGTTGTAACTGGAATTTTGTATTGCAAAT
AAAACTCAGTACATTATGTAGAACAGTGTAGAGTCACATTCATATCTTGAATGGAGAAGA
TGGTTTATTAGGTCGAGCTATTTACTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4913 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06474.1	203	5e-85	protein\|ribosomal protein L13, putative, expressed
Brachypodium v1_2	Bradi4g41070.1	272	3e-88
Arabidopsis v10	AT3G01790.1	205	3e-71	Ribosomal protein L13 family protein \| chr3:283880-285583 REVERSE LENGTH=205