barSeed - Barley Seed Development Database

Probe CUST_38559_PI390587928

Source Contig U35_4917

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38559_PI390587928	Hv_44K_v2	GACGCGGTGACTTTTTGTATAACTATATCATACTCCCTCCGTTTCTAAATATAAGTCTTT	691	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355166	4504	2e-24	4439 - 4498	100	60 / 60	plus	ABC14078
Harvest21	ABC14078	793	3e-25	40 - 99	100	60 / 60	minus	ABC14078
Harvest35	U35_4917	790	3e-25	692 - 751	100	60 / 60	plus

Contig Sequence (790 bp)

>U35_4917 790 Hv_44K_v2
GGGAGTATGCTGAATTAACAATGGACGACATATTAGAGGCAAACATAGGGCCTGGTACCC
CAAGGGAAAGTTGGGATCTTGGCAAGCTGATAGCTAAAGTTCAACAGTATTGTTACCTAT
TAAATGACTTGGCACCAGAACTGTTGGAGAGTAAATGCTCAAGCTACGAGGATTTACAGG
AGTACCTTCGAACCCGAGGGCGTGAAGCATACTTCCAAAAAGCTGAAATTGTGGAGAAGC
AAGCTCCAGGTTTGATGAAGGAAGCCGAGCGATTCCTAATCCTAAGCAATATTGATAAGC
TCTGGAAAGAACACTTGCAAGCTTTAAAGTTTGTGCAACAAGCTGTTGGGTTAAGGGGCT
ATGCTCAACGAGACCCCCTTATCGAATATAAACTTGAGGGATATAATCTTTTCTTGGATA
TGATGGCTCAAATCCGGAGAAATGTTATTTATTCAGTATATCAGTTCCAACCTGTGATGA
AGAAGCAAGAGGAAAATTCTGGAAAGAACGATTCAAAAAAGAATCTGCACAAGGGTGCCA
AGAAACTTGGTGCAGCCCAAGCTGCATCTTGAGTTTGATATGAGATTTTGTTTTTCTGTA
GCTATGGCTTGCTGATTTTGAGAATTCTCAGGTGTATATGTTCTCTTTACAGTTTACGAT
GGCTGAAGTGTGGGAGGACAGAAGTACAAATGACGCGGTGACTTTTTGTATAACTATATC
ATACTCCCTCCGTTTCTAAATATAAGTCTTTTAAGATATTTCATTATGAGTCTAAAAAAA
AAAAAAAAAA

Homology of Contig U35_4917 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g21820.1	1016	5e-96	protein\|preprotein translocase subunit secA, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g12067.1	1000	1e-104
Arabidopsis v10	AT4G01800.2	1042	5e-90	\| Symbols: AGY1, SECA1 \| Albino or Glassy Yellow 1 \| chr4:770926-776134 REVERSE LENGTH=1042