- Probe CUST_38552_PI390587928
- Source Contig U35_30090
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_38552_PI390587928 | Hv_44K_v2 | AAATCCAGTCGCTGAAGCACCGCATCCTGCAACAAGGCCAGACCAGTGCCGAGAACGGCG | 312 | GeneList: skyblue MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.393 | 0.506 | 2.710 | 3.341 | 0.898 | 1.064 |
Raw | 3.057 | 6.055 | 47.603 | 86.980 | 8.888 | 11.253 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_67906.1 | 1673 | 7e-23 | 870 - 929 | 98 | 59 / 60 | plus | None |
JLOC1 | JLOC1_44879.1 | 314 | 8e-25 | 183 - 242 | 100 | 60 / 60 | minus | |
Harvest21 | ABC29800 | 399 | 3e-25 | 313 - 372 | 100 | 60 / 60 | plus | |
Harvest35 | U35_30090 | 399 | 3e-25 | 313 - 372 | 100 | 60 / 60 | plus |
Contig Sequence (399 bp)
>U35_30090 399 Hv_44K_v2 CACAAGCGCGGGGAGACGACGAGGGAGCGGGCGCCGTGGCGGTCGGAGTGTCGATGCACC ACGCGGTGGCCGACGGCCAGTCGCTGTGGCAGTTCATGAGGGCGTGGGCCGGCGCGTCGC GGCAGGGCTCGCAAGCAGCGACGGGTCCGCCGCCGTCATTCGACAGGGCGGGCATCCTGC GGCACCCCAAAGCAGAGGCGGCAGCGCGCGAGTTCGCCCGCCTCTCGGCGCCGGATCTGC CCAGAGTCAACACGCTCCCGGAGCCGGACTGGACGCGGCAGTGCAGGCGGACCTACCTGC TCACCGCCTCCCAAATCCAGTCGCTGAAGCACCGCATCCTGCAACAAGGCCAGACCAGTG CCGAGAACGGCGGCAAACAGGAGCCCCCGACCACCTACA
Homology of Contig U35_30090 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |