barSeed - Barley Seed Development Database

Probe CUST_38542_PI390587928

Source Contig U35_4920

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38542_PI390587928	Hv_44K_v2	TTCAAGAGACTGCTATTGAACAAGTGCCAAGAGGAGTTTGAGAGAGGCGAAAGAGAAGAA	1100	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.891	1.654	1.166	0.700	0.361	0.299
Raw	9419.593	12437.017	7896.360	7013.123	1326.250	1218.102

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57581.3	4867	2e-24	1670 - 1729	100	60 / 60	minus	ABC06577
MLOC	MLOC_57581.2	4877	2e-24	1680 - 1739	100	60 / 60	minus	ABC06577
MLOC	MLOC_57581.1	5318	2e-24	2121 - 2180	100	60 / 60	minus	ABC06577 ABC48272
JLOC1	JLOC1_37343.2	6342	8e-25	4195 - 4254	100	60 / 60	plus
JLOC1	JLOC1_37343.1	6420	8e-25	4273 - 4332	100	60 / 60	plus
Harvest21	ABC11244	1256	3e-25	1101 - 1160	100	60 / 60	plus
Harvest35	U35_4920	1256	3e-25	1101 - 1160	100	60 / 60	plus

Contig Sequence (1256 bp)

>U35_4920 1256 Hv_44K_v2
GCTTACCCGAACAAAGTTACGCTGGGAGAAAGAAGAAGCGGAAGGAAATGCTTTCGAAAG
CTGATGCTGCTGGTACTTCAGATCTTTACAATGCATACAAGGGACCACAAGAACAGTCTG
AGAGTCTTGCCACATCAGAGGGTGCTGATAGTTCAACAGTTGACGCGACACATGTGCTGC
CTGAGGAATCAGAAAGGGAGGTGATGTGCGAGGATGATGGAAAGAAAAAAATTGAGCTTG
ATGATTGGGAAGATGCAGCAGACATGTCTACTCCAAAGCTGCAAAGTTCGGGCTCTGGGA
ACCAGGCTAGTGCAGTGCAACAGCCAGATTCTGATATGGCTGAAGCTAATGGTCGAAAGA
AATATTCTCGTGATTTTCTGCTAACTTTTGCACATCAGTATTCTAGTCTTCCTGTTGGCA
TCCGGATGGATACTGTCACTAGTACTCTATTCAAAGATTTGGCAGGAAAATCCTATGTTA
TTGATCGGGAACCTCACACAAGTTCTGCAAGGGGGTCTGATAGACCAACATCTCGCGGTG
ATCGCCGCGGTCCTGCTATGGATGATGATAAGTGGTCAAAATCAGGTGTTCCTTTCAGTC
CTGTCCGTGATCCCCACATGGACATGACAAACGGCCCAGCAACGAATTACCGCGGCGGCC
AAGGAGGTACTCATGGTGTTTTGAGGAATCCACGTGGTGTACTTGTGGGACCGCAATCCA
ATGCTCCTCAAGTACCCCGCAGTGGCTCTGATGCTGATAGATGGCAGCAAAAGGGTCTGA
TCCCTTCTCCTGTTACACCCATGCAAATAATGCACAAAGCTGAGAAAAAGTATGTTGTCG
GCAAAGTTTCTGATGAGGAGCAGGCAAAGCAGCGGCAGCTGAAAGCCATTCTGAATAAAC
TGACCCCACAAAACTTTGACAAGCTTTTTGAACAAGTGAAAGAGGTGAACATTGACAATG
TTTCAACTCTTACTGGGGTGATTTCACAGATATTTGACAAAGCTTTGATGGAACCAACTT
TCTGTGAAATGTATGCTAACTTCTGTTCCCATTTGGCTGGTGCACTGCCAGACTTTAGTG
AGGACAATGAAAAGATTACATTCAAGAGACTGCTATTGAACAAGTGCCAAGAGGAGTTTG
AGAGAGGCGAAAGAGAAGAAGCTGAAGCAGATAAAACGGAGGAGGAAGGTGAGATTAAAC
AAACGAAAGAGGAAAGGGAAGAAAAGAGAGTTAAAGCTCGAAGGCGCATGCTGGGT

Homology of Contig U35_4920 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g36940.2	1793	1e-159	protein\|eukaryotic translation initiation factor 4G, putative, expressed
Brachypodium v1_2	Bradi1g25002.1	1867	0.0
Arabidopsis v10	AT3G60240.4	1727	4e-99	\| Symbols: EIF4G, CUM2 \| eukaryotic translation initiation factor 4G \| chr3:22261842-22268295 FORWARD LENGTH=1727