barSeed - Barley Seed Development Database

Probe CUST_38540_PI390587928

Source Contig U35_42070

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38540_PI390587928	Hv_44K_v2	CCCGAAGATTTTTATCATTAGCGTGGGACAGCTGAAAAAGACACAATGGTTTCTGTGAAA	14	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.260	1.366	1.104	0.929	0.389	0.437
Raw	2493.940	4170.933	2958.707	3877.130	579.241	704.626

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_23544.2	1787	1e-22	1548 - 1606	98	58 / 59	plus
JLOC1	JLOC1_23544.1	1781	1e-22	1542 - 1600	98	58 / 59	plus
Harvest21	ABC37452	597	3e-25	15 - 74	100	60 / 60	minus
Harvest21	ABC03631	1170	5e-23	61 - 119	98	58 / 59	minus	ABC03631
Harvest35	U35_42070	597	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (597 bp)

>U35_42070 597 Hv_44K_v2
TTTTTTTTTTTTTTTTTCACAGAAACCATTGTGTCTTTTTCAGCTGTCCCACGCTAATGA
TAAAAATCTTCGGGAAGTATTCTTCATAGAGGGATCAAGCAATACAACACGGTAGCAATT
CTTACAAACCAGTTTCCACAAATTTTAATCTCAGAAAACAAAAGGGTACAATGTAACTGC
ATTATTTGTCCGATTCTGATGTGCCATTTGATCCATAACGAACACAGGTCACCCAAGATG
GTAGTAAAACACTAATCGCTTGCAACGGCAGGTACAAAGAGGAGACGCAGCACCAATCAG
TAGTCGTCGCCTCTGGATATGACTTCTTTACAGGTTGGCCGGAGCAAAATGGTGTGCTCA
AACTGGGACACAGCCAACATCACATAGATTTTTCAGTGCCATGAGATATTTGGTCTCGCC
GATGCGGTCCAAGTACCGGCGGCAAAATGCAAGTGTACCAAAGTTGTTGTTGATTGTCCC
CAGTAGCTGCTTGGCTTTTGCTACCCTCAAGGGTACATGCCCAACATCAAAGTTCTTCAT
GTAATGACTGCATTCCAAGTCCTCCCTCACAAATCCCTTTCCTGTAGACCCAAAAGT

Homology of Contig U35_42070 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None