barSeed - Barley Seed Development Database

Probe CUST_38535_PI390587928

Source Contig U35_4924

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38535_PI390587928	Hv_44K_v2	GTGTGCATAAACAAAATAAACCAGAGCACTCTGACCAATTGGGTTCTTCGAAGTAAAAAA	1566	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.475	4.428	0.744	0.674	0.942	0.839
Raw	47.375	53.201	6.802	8.917	3.689	3.214

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362199	1634	3e-21	1581 - 1634	100	54 / 54	plus	ABC10346
JLOC1	JLOC1_29636.1	608	5e-22	520 - 574	100	55 / 55	plus
Harvest21	ABC10346	1638	3e-25	13 - 72	100	60 / 60	minus	ABC10346
Harvest35	U35_4924	1638	3e-25	1567 - 1626	100	60 / 60	plus

Contig Sequence (1638 bp)

>U35_4924 1638 Hv_44K_v2
AGTGCACCTTGCACTCAAATCCATCCTGCTGACTTCTCAGCTCGGTCACCTCCGTTCCAT
GGTGTACCATGCTGATGGTGGCCGCCGCCGCTGCAGCAGCGCCAGACCAGCCCTTCTTCT
CCCAGCCCCGCCGCCCCCCACAGCCCGCTAGCCTCTTCTCCCTAAGGAAACCCGGCGGCT
CGGCCCTCCCGCCTCACTCCTCGCGCTGTCGCTGCCACTGCCCCTCCTGGAGCAACAGCG
CGCACGCGCGCCGGAGCAGCCATTGCCGTGCCGGTGCGACGCCGGACCACCCGGGCGAGC
CGCCGCCGCCGTCGGGCAGGGGCGGCCGTTACCATCCCTGGGAGGATATCGCCGAGACGC
TTCAGCTCGACGACGGCGAGCCCGCGCGCCTCACCGACGCCGAATCCGCCCGGACAATCG
TGGAGGTCAACAACAATGCAACGGTGATGATCTCCACGCTCATCGATGACGGCGTGCACG
AGAGGATCATCCTGCCCGAGTTCCCCTACTTGACCGACGAGAATGGAGATATTTACTTCG
AGGTCGACAACGACGACGCGGTCATGGAAAACATTATGGGAGACGACAAGATTGCGCATG
TTATTATTGGACTCGATAACACAGATGTCTTTGCTGACTTGGATCTAGCGGCAGCGTCAT
CAACTTCATTTGCACAAGAAGAAGAAGAAGAAGAGGAGGAGGAAGAAGACGATGATTCTG
GCGATTCTGATGATGAATATGAGGAGGAGGGCATATATGCTGTTGATGAAGAAGATGGGG
ATGATGATGATGAAGATGACGATGCACCTAACTGGTCCAACCTTGAAACTGTAAATTCTT
GTCATCCACTATACTTTGCGAGGATGATTGTGGAGAATGCGAGCAAATCAAGTATAGATT
GGTTGGACCGACCACCTGCAAGCCTTGTTGTTGAGGGTCAGCTGAGACCTGCGTTTGCTG
AAGAGAGCACCATGGTTTCCAGGCATTTATTAAATGGTGATGAACCACTGAAAGACGACA
AAAAGGGAAGTGGGGCTACATTTTTCAAGGTTGAAGTTCTCAGCATTGAGCTGATCACTG
CATATGGTACAGAGCCCAAGGTAAAGATAGAAGAATACCGGAAATCTAGACCGGACATCA
TCGCGCACTCTGCACCGAACATAATATCGCGCTTGAGAGCCGGTGGAGACAAGATAACAC
AAGCTCTGAAATCACTCTGTTGGAGGTGCAAGGCCATCCAAGTAGAGGAAGCAGCAATTA
TCGGCGTGGACTGCCTTGGGTTCGACTTGAGATTGTGCTCAGGAACACAAGTGCAGACAC
TGAGATTTGCTTTCCCTACAAAGGCTAGTTCGGAGTTCAGCGCAGAGAAGCAGATACACG
AGCTTCTGTTTCCTAGGAGGATACATCAAGAAGGGGAGTCACCACAGGCTCAACCCAAAG
AGTACTGATGTAAACAGAGATGCGATATTTTCTTCTTTTTTAGGAAATTTAATCCAGCAA
CACAAATAGCAGTAGCCATCTTAATCAAGTTTTTTCGAATTCACATTGTGATTCTGATCT
TTGAGCGTGTGCATAAACAAAATAAACCAGAGCACTCTGACCAATTGGGTTCTTCGAAGT
AAAAAAAAAAAAAAAAAA

Homology of Contig U35_4924 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g34130.1	463	5e-179	protein\|expressed protein
Brachypodium v1_2	Bradi4g16885.1	390	1e-132
Arabidopsis v10	AT3G49140.1	499	9e-57	Pentatricopeptide repeat (PPR) superfamily protein \| chr3:18212187-18215557 REVERSE LENGTH=499